Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis

By H. Akashi, T. Gojobori. 2002

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The oligodeoxynucleotide sequences corresponding to never-expressed peptide motifs are mainly located in the non-coding strand (2010, background): “, mass and charge) [24], translational constraints [25], and the metabolic costs of amino acid biosynthesis [26].”
Protein length in eukaryotic and prokaryotic proteomes (2005, background): “It has also been suggested that minimization of costs related to amino acid usages is a significant force in protein evolution (24,25).”
Codon identity regulates mRNA stability and translation efficiency during the maternal‐to‐zygotic transition (2016, neutral): “1982; Akashi, 1994; Akashi & Gojobori, 2002; Drummond & Wilke, 2008; Kudla et al, 2009; Novoa & Ribas de Pouplana, 2012).”
Responses of extracellular enzymes to simple and complex nutrient inputs (2005, background): “3(B)), possibly because converting collagen into enzyme protein avoids the cost of amino acid synthesis (Akashi and Gojobori, 2004).”