Adaptation genomics: the next generation.

By J. Stapley, Julia Reger, P. Feulner, C. Smadja, J. Galindo, R. Ekblom, C. Bennison, Alexander D. Ball, A. Beckerman, J. Slate. Trends in Ecology & Evolution, 2010

670 citations recorded by the source corpus.

Subfields: Ecology, Genetics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/b7f6632e9db7f7ce591c98fabaf8ba483e1a0741

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Citations in the corpus

Ecological genetics of invasive alien species (2011, background): “…the RAD-tag method (Baird et al. 2008) allows an unprecedented number of genetic markers to be characterised and typed, offering a powerful means to identify loci contributing to adaptation during invasions (see Hohenlohe et al. 2010 for a recent application and Stapley et al. 2010 for a review).”
Marine invasion genetics: from spatio-temporal patterns to evolutionary outcomes (2014, background): “They allow for precise population genetic analyses, while at the same time allowing for the detection of adaptive changes through the study of outlier loci with nonneutral behaviour (Stapley et al. 2010; Rohfritsch et al. 2013).”
Applications of next-generation sequencing to the study of biological invasions (2015, background): “For example, analyses of NGS data enable researchers to examine patterns of selection (Angeloni et al., 2012), and identify candidate genes underpinning adaptation (Stapley et al., 2010).”
Third generation sequencing: technology and its potential impact on evolutionary biodiversity research (2016, methodology): “Transcriptome analyses have become an important tool to understand the genomic basis of adaptations or to investigate phenotypic plasticity (Elmer & Meyer, 2011; Schlichting & Wund, 2014; Stapley et al., 2010).”
Applications of next-generation sequencing to phylogeography and phylogenetics. (2013, background): “We will not focus on uses of NGS for ecological genomics or adaptive divergence because these topics have been reviewed in detail elsewhere (Stapley et al., 2010; Rice et al., 2011).”
Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions (2016, positive): “…Savolainen et al. 2013; Tif ﬁ n and Ross-Ibarra 2014), genetic-environment association methods (Rellstab et al. 2015), genomic resource development (Stapley et al. 2010; Ellegren 2014; Bragg et al. 2015; Manel et al. 2016), signatures of selection (Vitti et al. 2013), and mapping variation…”
Genome-wide genetic marker discovery and genotyping using next-generation sequencing (2011, background): “” Now, with the advent of next-generation sequencing (NGS), there are several such approaches, which are capable of discovering, sequencing and genotyping not hundreds but thousands of markers across almost any genome of interest in a single ste”
The application of genetics to marine management and conservation: Examples from the Indo-Pacific (2014, background): “…in facilitating broader phylogeographic studies (e.g., Puritz et al. 2012), the evolution of mating systems (e.g., Hart 2012), adaptation (e.g., Stapley et al. 2010), and has been shown to resolve very recent divergence between marine and freshwater fish populations following an initial…”
Stacks: an analysis tool set for population genomics (2013, background): “…genetics, such as identiﬁcation of parentage and relatedness, migration and gene ﬂow, population structure and phylogeography, and phylogenetic reconstruction, to be addressed with unprecedented power and precision (Mitchell-Olds et al. 2008; Hohenlohe et al. 2010a; Stapley et al. 2010).”
Species Delimitation: A Decade After the Renaissance (2013, neutral): “There is an ongoing genomics revolution for the study of adaptation in ecological and evolu‐ tionary non-model organisms derived from (NGS) technologies [76,128].”