Sulfate reducing bacteria in microbial mats: Changing paradigms, new discoveries

By L. Baumgartner, R. Reid, C. Dupraz, A. Decho, D. Buckley, J. Spear, Kristen M. Przekop, P. Visscher. 2006

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Microbial mat ecosystems: Structure types, functional diversity, and biotechnological application (2018, neutral): “2), performed by the primary producers Cyanobacteria [28,29].”
Photosynthesis, Respiration and Exopolymer Calcium-Binding in Biofilm Calcification (Westerhöfer and Deinschwanger Creek, Germany) (2008, methodology): “…using microbiological methods, including microelectrodes, microautoradiography, fluorescence in situ hybridization (FISH), confocal laser scanning microscopy (e.g., Visscher et al. 1998, 2000; Reid et al. 2000; Kawaguchi and Decho 2002a, b; Decho et al. 2005; Baumgartner et al. 2006).”
Processes of carbonate precipitation in modern microbial mats (2009, background): “(3) toward the left, favoring precipitation of CaCO3.”
Flat laminated microbial mat communities (2009, methodology): “Initial studies using dot blot hybridization and limited sequencing (Risatti et al., 1994), have given way to large scale sequencing (Ward et al., 2006; Baumgartner et al., 2006), gene expression studies (Steunou et al., 2006), and metagenomic analysis (Bhaya et al., 2007).”
Microbial Extracellular Polymeric Substances (EPSs) in Ocean Systems (2017, background): “In microbial mat systems, where highly active bacterial respiration and photosynthesis occur, the pH has been shown to vary from pH 6.0–10.0 over a 24 h (i.e., diel) cycle (Visscher et al., 2000; Des Marais, 2003; Baumgartner et al., 2006).”