COMPUTER PROGRAMS: onesamp: a program to estimate effective population size using approximate Bayesian computation

By David A. Tallmon, Ally Koyuk, Gordon Luikart, MARK A. Beaumont. Molecular Ecology Resources, 2008

351 citations recorded by the source corpus.

Subfields: Ecology, Genetics

View Paper: https://www.semanticscholar.org/paper/b4c0d15413aef1bacb22fe979b47f8dad493fec3

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Ecology

1. L. Waits
2. Samuel A. Cushman
3. Marie-Josée Fortin
4. R. Holderegger
5. P. Taberlet
6. Andrew R Whiteley
7. S. Manel
8. Gernot Segelbacher

In Genetics

1. Samuel A. Cushman
2. R. Holderegger
3. F. Allendorf
4. Marie-Josée Fortin
5. C. Do
6. Thomas Guillemaud
7. Arnaud Estoup
8. L. Waits

Citations in the corpus

• Genetic variation and effective population size in isolated populations of coastal cutthroat trout (2010, methodology): “ONeSAMP provided smaller credible limits than those from LDNE (Table 2).”
• Applications of landscape genetics in conservation biology: concepts and challenges (2010, methodology): “ABC approaches can estimate effective population sizes (Tallmon et al. 2004, 2008), migration rates after spatial expansion (Hamilton et al. 2005), levels of genetic introgression and admixture (Excoffier et al. 2005) or divergence time and gene flow in phylogeographic models (Hickerson et al.…”
• Linkage disequilibrium estimates of contemporary Ne using highly variable genetic markers: a largely untapped resource for applied conservation and evolution (2009, background): “HMean, harmonic mean; S, sample size; LD, linkage disequilibrium (Waples and Do 2008); ABC, Approximate Bayesian Computation (Tallmon et al. 2008); W, Waples (1989); JR, Jorde and Ryman (2007); ML, pseudo maximum likelihood (Wang 2001).”
• Responsible genetic approach to stock restoration, sea ranching and stock enhancement of marine fishes and invertebrates (2017, background): “The genetic effective size of a wild population can be estimated before supplementation begins with a single sample of molecular data (Tallmon et al. 2008; Waples and Do 2008) or with generational samples (Wang et al.”
• Approximate Bayesian Computation in Evolution and Ecology (2010, background): “A related ABC application, although based on a single sample, is to infer current population sizes using patterns of pairwise relatedness and linkage disequilibrium (Ramakrishnan et al. 2004, Tallmon et al. 2008).”
• Approximate Bayesian Computation (2013, neutral): “[59]”
• Reconstructing routes of invasion using genetic data: why, how and so what? (2010, background): “Several ABC programs have recently been developed to provide nonspecialist users with solutions varying in the extent to which they are user-friendly (Cornuet et al. 2008; Foll et al. 2008; Hickerson & Meyer 2008; Jobin & Mountain 2008; Tallmon et al. 2008; Lopes et al. 2009; Weg- mann et al. 2009).”
• abc: an R package for approximate Bayesian computation (ABC) (2011, background): “Thus, many existing ABC software are specific to a particular class of models (Hickerson et al. 2007; Cornuet et al. 2008; Lopes et al. 2009) or even to the estimation of a particular parameter (Tallmon et al. 2008).”