Detecting a local signature of genetic hitchhiking along a recombining chromosome.

By Yuseob Kim, W. Stephan. Genetics, 2002

645 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/b4b02a2ddc7d85dec507cf2f9994a7456385a703

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Citations in the corpus

Molecular signatures of natural selection. (2005, methodology): “Kim & Stephan ( 56 ) developed a method based on an explicit population genetic model of a selective sweep.”
Mapping signatures of positive selection in the genome of livestock (2014, methodology): “For example in a method proposed by Kim and Stephan (2002) the maximum of composite likelihood ratio (CLR) of data under a model assuming a selective sweep is compared to that under neutral equilibrium.”
Linkage disequilibrium — understanding the evolutionary past and mapping the medical future (2008, methodology): “Recently, methods have been developed for detecting regions of unusually low heterozygosity that are indications of past hitch-hiking event”
INVITED REVIEW: Using genome scans of DNA polymorphism to infer adaptive population divergence (2005, background): “Although hitch-hiking is expected to increase correlations in diversity levels among linked loci (Kim & Stephan 2002), correlations in the depths of neutral genealogies are expected even in the absence of selection at linked sites (Rosenberg & Nordborg 2002).”
Detecting loci under selection in a hierarchically structured population (2009, background): “, 1995) and a locally increased extent of linkage disequilibrium (Kim and Stephan, 2002; Przeworski, 2002; McVean, 2007).”
Efficient ancestry and mutation simulation with msprime 1.0 (2021, background): “Another elaboration of the standard neutral coalescent with recombination is the addition of selective sweeps (Kaplan et al. 1989; Braverman et al. 1995; Kim and Stephan 2002).”
Fitness and its role in evolutionary genetics (2009, background): “Such valleys in polymorphism can allow inference of both the likely location of a beneficial mutation and the magnitude of its fitness advantag”
SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes (2013, methodology): “Kim and Stephan (2002) interpreted fn,i as the probability of observing a single site where i derived alleles are found in a sample of size n.”
Probability Models for DNA Sequence Evolution (2002, methodology): “Following Kimura and Maruyama (1966) and Hey (1991), we formulate the dynamics of the process and the corresponding coalescent as follows.”