WBSMDA: Within and Between Score for MiRNA-Disease Association prediction

By Xing Chen, Chenggang Clarence Yan, Xu Zhang, Zhuhong You, Lixi Deng, Y. Liu, Yongdong Zhang, Qionghai Dai. Scientific Reports, 2016

346 citations recorded by the source corpus.

Increasing evidences have indicated that microRNAs (miRNAs) are functionally associated with the development and progression of various complex human diseases. However, the roles of miRNAs in multiple biological processes or various diseases and their underlying molecular mechanisms still have not been fully understood yet. Predicting potential miRNA-disease associations by integrating various heterogeneous biological datasets is of great significance to the biomedical research. Computational methods could obtain potential miRNA-disease associations in a short time, which significantly reduce the experimental time and cost. Considering the limitations in previous computational methods, we developed the model of Within and Between Score for MiRNA-Disease Association prediction (WBSMDA) to predict potential miRNAs associated with various complex diseases. WBSMDA could be applied to the diseases without any known related miRNAs. The AUC of 0.8031 based on Leave-one-out cross validation has demonstrated its reliable performance. WBSMDA was further applied to Colon Neoplasms, Prostate Neoplasms and Lymphoma for the identification of their potential related miRNAs. As a result, 90%, 84% and 80% of predicted miRNA-disease pairs in the top 50 prediction list for these three diseases have been confirmed by recent experimental literatures, respectively. It is anticipated that WBSMDA would be a useful resource for potential miRNA-disease association identification.

Subfields: Cancer Research, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/b334381355dba9b38cd804c89775c85659e9c988

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Cancer Research

1. Zhuhong You
2. Di Xie
3. Qi Zhao
4. Xing Chen

In Molecular Biology

1. Zhuhong You
2. Di Xie
3. Qi Zhao
4. Xing Chen

Citations in the corpus

• MicroRNAs and complex diseases: from experimental results to computational models (2019, positive): “have developed the model of Within and Between Score for MiRNA–Disease Association prediction (WBSMDA), which integrates miRNA functional similarity, disease semantic similarity and Gaussian interaction profile kernel similarity of diseases and miRNAs [196].”