Positioning of proteins in membranes: A computational approach

By Andrei L. Lomize, Irina D. Pogozheva, Mikhail A. Lomize, Henry I. Mosberg. 2006

248 citations recorded by the source corpus.

Subfields: Biophysics, Molecular Biology

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Biophysics

1. Yang Zhang

In Molecular Biology

1. Yang Zhang
2. Jianyi Yang
3. Jian Zhang
4. Richard Jang
5. Robin Pearce
6. Gábor E. Tusnády
7. Mikhail A. Lomize
8. Henry I. Mosberg

Citations in the corpus

• PDBTM: Protein Data Bank of transmembrane proteins after 8 years (2012, background): “The orientation of the protein relative to the membrane normal is defined by minimizing its transfer energy ( Gtransfer) from water to the lipid bilayer with respect to the shift along the bilayer normal, hydrophobic thickness, rotation angle and tilt angle (9).”
• OPM database and PPM web server: resources for positioning of proteins in membranes (2011, methodology): “The accuracy of PPM predictions was thoroughly tested for a large set of TM and peripheral proteins, peptides and small molecules whose membrane penetration depths, orientations with respect to the lipid bilayer or membrane binding affinities have been experimentally studied (9,10,27).”
• GPCR-I-TASSER: A hybrid approach to G protein-coupled receptor structure modeling and the application to the human genome (2015, background): “Zhang, 2010b), and the free energy change of GPCR and water/lipid interactions (Lomize et al., 2006) (see Equations S2 and S3 in Supplemental Experimental Procedure).”