Efficiency of model‐based Bayesian methods for detecting hybrid individuals under different hybridization scenarios and with different numbers of loci

By Juha‐Pekka Vähä, C. Primmer. Molecular Ecology, 2005

828 citations recorded by the source corpus.

Subfields: Genetics

View Paper: https://www.semanticscholar.org/paper/a692e1a5a2271bce7b026048a8daa8f319eca723

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In Genetics

1. Monica Rodriguez
2. Per Kryger
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Citations in the corpus

• Spatio‐temporal sharing between the European wildcat, the domestic cat and their hybrids (2008, neutral): “Thus the values of qik can be used to identify first generation of hybrids or admixed animals if their qik value is split between different clusters (Vähä & Primmer, 2006).”
• A review of methods for discrimination of honey bee populations as applied to European beekeeping (2011, background): “The threshold for hybrid individuals is set to p 0.95 within the hybrid class “pure” in order to reduce the misclassification of backcrossed individuals as pure to a minimum (Vähä and Primmer, 2006).”
• Efficiency of markers and methods for detecting hybrids and introgression in stocked populations (2009, methodology): “Our number of microsatellite loci and level of population divergence between wild populations and hatchery stocks approached acceptable conditions (12 loci when FST is around 0.21, Vähä and Primmer 2006).”
• Molecular ecology of marine turtles: New approaches and future directions (2008, methodology): “There are also methods for detecting hybrids: NEWHYBRIDS (Anderson and Thompson, 2002; Vaha and Primmer, 2006).”
• Computer simulations: tools for population and evolutionary genetics (2012, background): “which increased fit owing to addition of terms is balanced by a penalty for each additional term.”
• Genomics of Origin, Domestication and Evolution of Phaseolus vulgaris (2014, background): “However, to distinguish between F2, backcrosses, or later-generation hybrids with model-based Bayesian methods can be challenging, even if many loci are examined and when divergence between parental populations is high (Vähä and Primmer 2006; Allendorf and Luikart 2007).”
• Applying molecular-based approaches to classical biological control of weeds (2011, background): “Nason and Ellstrand, 1993), but detecting hybrids relied on the presence of species specific markers, which do not always exist (Vaha and Primmer, 2006).”