TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

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Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways (2013, background): “1 (32) with more stringent requirement than described in (32).”
psRNATarget: a plant small RNA target analysis server (2017 release) (2018, methodology): “We further compared performances between new psRNATarget and the TAPIR (20) using its fast mode since the hybrid mode stringently restricts the size of data that can be analyzed each time due to slow computational speed of the algorithm.”
A MicroRNA Superfamily Regulates Nucleotide Binding Site–Leucine-Rich Repeats and Other mRNAs[W][OA] (2012, methodology): “, 2003), and, of the 186 predicted NBS-LRR proteins encoded in the tomato genome, there were 58 with miR482 target motifs as assessed by the TAPIR protocol (Bonnet et al., 2010) (Figure 3A).”