RNAplex: a fast tool for RNA-RNA interaction search

By Hakim Tafer, Ivo L. Hofacker. Bioinform., 2008

406 citations recorded by the source corpus.

Subfields: Accounting

View Paper: https://www.semanticscholar.org/paper/9b66bb6c1564f15b164dbbed1626c78e7c364466

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In Accounting

1. Andreas S. Richter
2. Anke Busch
3. Rolf Backofen

Citations in the corpus

• ViennaRNA Package 2.0 (2011, methodology): “RNAplex [45] achieves a massive gain in speed by simplifying the energy model for interior loops to an affine gap cost model, effectively reducing the folding problem to a variant of local sequence alignment.”
• IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions (2008, methodology): “The most popular tools incorporating this idea are RNAHYBRID (Rehmsmeieret al., 2004; Kruger and Rehmsmeier, 2006), RNADUPLEX and RNAPLEX (Tafer and Hofacker, 2008), and DINAMELT (Dimitrov and Zuker, 2004; Markham and Zuker, 2005).”