Global functional profiling of gene expression ? ? This work was funded in part by a Sun Microsystem

By Sorin Draghici, Purvesh Khatri, R. P. Martins, G. Charles Ostermeier, Stephen A. Krawetz. 2003

358 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/994dbf22f7e1a12c5501fa64c075327782fe2c17

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In Molecular Biology

Citations in the corpus

LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data (2009, methodology): “Various web-based or downloadable computer programs utilizing these methods have been developed, such as Onto-Express (Draghici et al., 2003; Khatri et al., 2005), David/EASE (Dennis, Jr et al., 2003; Hosack et al., 2003), the Gostats package of Bioconductor (Gentleman, 2005), GOMiner (Zeeberg et al”
GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes (2004, methodology): “These include FunSpec (Robinson et al., 2002), Onto-Express (Draghici et al., 2003a,b; Khatri et al., 2002) and FatiGO (Al-Shahrour et al., 2004) which are web applications; GoMiner (Zeeberg et al., 03), a Java application; GeneMerge (Castillo Davis and Hartl, 2003), which is a standalone Perl…”
Enrichment or depletion of a GO category within a class of genes: which test? (2007, background): “The aim is to establish whether the class of the DE genes presents an enrichment and/or a depletion of the GO category of interest with respect to the total gene population.”
Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges (2012, methodology): “edu) [4,5]”
Significance analysis of functional categories in gene expression studies: a structured permutation approach (2005, background): “Thus the null distributions for genelist global statistics are assumed to be hypergeometric (Draghici et al., 2003; Beißbarth and Speed, 2004; Al-Shahrour et al., 2004; Hosack et al., 2003; Zeeberg et al., 2003; Zhong et al., 2004; Berriz et al., 2003) or approximations thereof (Kim and Falkow,…”