tmVar: a text mining approach for extracting sequence variants in biomedical literature

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tmChem: a high performance approach for chemical named entity recognition and normalization (2015, methodology): “The tokenization is the same as tmVar; specifically, tokens are separated at whitespace and punctuation, digits, lowercase letters and uppercase letters are divided into separate tokens [24].”
PubTator central: automated concept annotation for biomedical full text articles (2019, background): “While the concept taggers used in PubTator (10) demonstrated high performance in their respective benchmarks (31–34), the content of full text articles is more complex than abstracts, making them more difficult to annotate accurately.”
PubTator: a web-based text mining tool for assisting biocuration (2013, background): “gov/CBBresearch/Lu/Demo/DNorm/) for diseases, tmVar (21) for mutations and a dictionary-based lookup approach (8) for chemicals.”