MRBAYES : Bayesian inference of phylogeny

By John P. Huelsenbeck, Fredrik Ronquist. 2001

5,256 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/9850b5d66b0ae56bf2afdcfcda0e6f3f89848f86

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Citations in the corpus

• Phylogenetic Analyses of Basal Angiosperms Based on Nine Plastid, Mitochondrial, and Nuclear Genes (2005, methodology): “Keywords: basal angiosperms, Amborella, magnoliids, multigene analysis, synapomorphic substitutions, phylogeny.”
• LASER: A Maximum Likelihood Toolkit for Detecting Temporal Shifts in Diversification Rates From Molecular Phylogenies (2006, methodology): “Evolutionary Bioinformatics Online 2006: 257–260 257 Correspondence: Daniel L. Rabosky, Corson Hall, Cornell University, Ithaca, NY 14853-2701, U.S.A. Tel: 607-254-4262; Email: DLR32@cornell.edu Keywords: Maximum likelihood, diversifi cation, birth-death process, phylogeny”
• Phylogeography and species limits in the Gymnodactylus darwinii complex (Gekkonidae, Squamata): genetic structure coincides with river systems in the Brazilian Atlantic Forest (2005, methodology): “Bayesian analyses were also performed using MrBayes 2.0 (Huelsenbeck & Ronquist, 2001), based on the GTR + I + G model of DNA substitution, with the parameter values estimated as part of the analysis.”
• On the head morphology of Tetraphalerus, the phylogeny of Archostemata and the basal branching events in Coleoptera (2008, methodology): “2 (Huelsenbeck and Ronquist, 2001; Ronquist and Huelsenbeck, 2003).”
• Biogeography and molecular phylogeny of the genus Schizothorax (Teleostei: Cyprinidae) in China inferred from cytochrome b sequences (2006, methodology): “The Bayesian inference (BI) was used to obtain an additional measure of support for ML branches with MrBayes 3.04 (Huelsenbeck & Ronquist, 2001).”
• Phylogeny of the Infraorder Caridea Based on Mitochondrial and Nuclear Genes (Crustacea: Decapoda) (2009, unknown): “0b4 (Huelsenbeck & Ronquist 2001).”
• Characterisation of the cacao somatic embryogenesis receptor-like kinase (SERK) gene expressed during somatic embryogenesis (2005, unknown): “This method was chosen because the same models of DNA substitution used in ML approaches can be used in a Bayesian analysis [28], with an advantage of less time consumption and the possibility to perform a large quantity of replications, giving an estimate of the statistical support of the branches.”
• Phylogeography of the northern hogsucker, Hypentelium nigricans (Teleostei: Cypriniformes): genetic evidence for the existence of the ancient Teays River (2003, methodology): “The burnin, the number of trees to be ignored prior to the Markov chain monte carlo reaching stationarity, was determined by plotting the log-likelihood scores of sampled trees against generation time (Huelsenbeck & Ronquist, 2001).”