GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop

By K. Zuberi, Harold Rodriguez, Farzana Kazi, S. Donaldson, Quaid D. Morris, Gary D. Bader. Bioinform., 2010

539 citations recorded by the source corpus.

Summary: The GeneMANIA Cytoscape plugin brings fast gene function prediction capabilities to the desktop. GeneMANIA identifies the most related genes to a query gene set using a guilt-by-association approach. The plugin uses over 800 networks from six organisms and each related gene is traceable to the source network used to make the prediction. Users may add their own interaction networks and expression profile data to complement or override the default data. Availability and Implementation: The GeneMANIA Cytoscape plugin is implemented in Java and is freely available at http://www.genemania.org/plugin/. Contact: gary.bader@utoronto.ca; quaid.morris@utoronto.ca

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/9771d2df7eb353df6db994223a46a911f91bbeb1

Citations in the corpus

• A travel guide to Cytoscape plugins (2012, unknown): “GeneMANIA 20 is one of the more refined plugins for this purpose.”
• CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data (2013, unknown): “Within the versatile framework of Cytoscape (Saito et al ., 2012; Shannon et al ., 2003), tools for ontology analysis (Bindea et al ., 2009) and gene function predictions (Montojo et al ., 2010) were developed.”