Phylogenetic analysis using PHYLIP.

By J. Retief. Methods in molecular biology, 2000

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Rewiring of the Fruit Metabolome in Tomato Breeding. (2018, methodology): “%) were filtered to build a neighbor-joining tree for 448 accession using PHYLIP (version 3.695) with 100 bootstrap replicates (Retief, 2000).”
SNP Discovery through Next-Generation Sequencing and Its Applications (2012, methodology): “Algorithms such as neighbor-joining and maximum likelihood implemented in the PHYLIP [143] and MEGA [144] software are commonly used to generate phylogenetic trees.”
Vanilloid receptor-related osmotically activated channel (VR-OAC), a candidate vertebrate osmoreceptor. (2000, methodology): “jp), the PHDsec program (Rost and Sander, 1993), and PHYLIP Electrophysiological characterization of VR-OAC was performed at (Retief, 2000).”