Gene-expression analysis and network discovery using Genevestigator.

By Philip Zimmermann, L. Hennig, Wilhelm Gruissem. Trends in Plant Science, 2005

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Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks. (2006, background): “In particular, the Genevestigator software should yield powerful clues, allowing us to connect these key molecular players and to discover novel crosstalk networks [66].”
Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell. (2009, methodology): “A gene was therefore made by gene analysis using the tool Genevestigator (www.genevestigator. ethz.ch; Zimmermann et al. , 2005).”
Transcriptomic Footprints Disclose Specificity of Reactive Oxygen Species Signaling in Arabidopsis1[W] (2006, methodology): “Within the different tools of GENEVESTIGATOR, the Response Viewer was initially used to get an insight into the response profiles of individual ROS-regulated transcripts to different stimuli (Zimmermann et al., 2004, 2005).”
Genome-Wide Analysis of Fatty Acid Desaturases in Soybean (Glycine max) (2011, methodology): “The gene coexpression patterns were examined using tools at the Genevestigator web site ( Zimmermann et al. 2005; https://www.genevestigator.ethz.ch/).”
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis (2006, methodology): “Co-expression Tool (ACT) (8) and Genevestigator (9) provide co-expressed gene relationships calculated from the array data stored in TAIR and/or the NASCArrays.”