The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences.
By Paul Stothard. BioTechniques, 2000
1,734 citations recorded by the source corpus.
JavaScript is an object-based scripting language that can be interpreted by most commonly used Web browsers, including Netscape® Navigator® and Internet Explorer®. In conjunction with HTML form elements, JavaScript can be used to make flexible and easy-to-use applications that can be accessed by anyone connected to the Internet (3). The Sequence Manipulation Suite (http://www.ualberta.ca/~stothard/javascript/) is a collection of freely available JavaScript applications for molecular biologists. It consists of over 30 utilities for analyzing and manipulating sequence data, including the following:
Subfields: Ecology, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/941e078c3a4bbafe7a40a0bf8ac0d670d5f4b053
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In Ecology
- Giovanni Capone
- Brett Trost
- Candida Fasano
- Darja Kanduc
- Mikelis G. Bickis
- Anthony J. Kusalik
- Andrew Kropinski
- A. Varsani
In Molecular Biology
- Giovanni Capone
- Brett Trost
- Candida Fasano
- Darja Kanduc
- Mikelis G. Bickis
- Anthony J. Kusalik
- Andrew Kropinski
- A. Varsani
Citations in the corpus
- Omentin Plasma Levels and Gene Expression Are Decreased in Obesity (2007, methodology): “The experimentally determined pIs were identical to the predicted pI values for omentin 1 and 2 based on amino acid sequence (26).”
- VIRIDIC—A Novel Tool to Calculate the Intergenomic Similarities of Prokaryote-Infecting Viruses (2020, methodology): “And lastly, two artificial DNA sequences were generated by i) scrambling 144 the T7 genome with Shuffle DNA, part of the Sequence Manipulation Suite (Stothard 2000) and 145 ii) using Vladimír Čermák's Random DNA Sequence Generator at 146 http://www.”
- The oligodeoxynucleotide sequences corresponding to never-expressed peptide motifs are mainly located in the non-coding strand (2010, methodology): “org/sms2/)[14] was used to generate a DNA sequence representing the most likely, optimized coding sequence.”