A new algorithm to calculate the nestedness temperature of presence–absence matrices

By M. Rodríguez-Gironés, Luis Santamaría. 2006

417 citations recorded by the source corpus.

Subfields: Ecology, Evolution, Behavior and Systematics, Nature and Landscape Conservation, Social Psychology

View Paper: https://www.semanticscholar.org/paper/92d84be19e3dbe73a278192321091a38e9d24d88

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Ecology, Evolution, Behavior and Systematics

In Nature and Landscape Conservation

In Social Psychology

Citations in the corpus

Learning from a benign neglect strategy in a national park: Response of saproxylic beetles to dead wood accumulation (2010, methodology): “For testing of nestedness in our community, we used the function nestedtemp (Rodríguez-Gironés and Santamaria, 2006) in vegan.”
Experimental effects of sediment deposition on the structure and function of macroinvertebrate assemblages in temperate streams (2011, methodology): “Nestedness across sites was calculated using the binarymatrix nestedness temperature calculator (BINMATNEST; Rodriguez-Girones and Santamaria, 2006), which is a recent improvement of the nested-temperature method of Atmar and Patterson (1993) in that it uses a more robust algorithm for matrix…”
Community structure in temporary freshwater pools: disentangling the effects of habitat size and hydroregime (2009, methodology): “To verify whether species-poor assemblages were nested subsets of species-rich assemblages we tested for nestedness in a presence–absence matrix including all invertebrate taxa in the studied pools using the program BINMATNEST (Rodriguez-Girones & Santamaria, 2006).”
Combined effects of habitat modification on trait composition and species nestedness in river invertebrates (2010, methodology): “This effect occurs where organisms at species-poor sites form a sub-set of those at richer sites (Atmar and Patterson, 1993; Rodriguez-Girones and Santamaria, 2006).”
On nestedness analyses: rethinking matrix temperature and anti‐nestedness (2007, background): “It is important to notice that randomly allocated presences will produce a matrix in which TB/100 (Rodrı́guez-Gironéz and Santamarı́a 2006).”
Indices, Graphs and Null Models: Analyzing Bipartite Ecological Networks (2009, methodology): “In particular, nestedness can be calculated by the Nestedness Temperature Calculator (Atmar and Patterson 1993), Aninhado (Guimarães and Guimarães 2006) and Binmatnest (Rodríguez-Gironés and Santamaría (2006), which is the program underlying the nestedness calculations presented here and also implem”
A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement (2008, background): “4; Rodrı́guez-Gironés and Santamarı́a 2006). Matrix fill corresponds to the degree of species occupancy in studies on metacommunities and to connectance in studies on species interaction networks (Table 1). It is important to note that the positive relationship between matrix fill and the degree of ”
Structure and dynamics of core/periphery networks (2013, background): “[178] found that R&D networks show an increased core/periphery coefficient [2] and nestedness [96] at the ‘golden age’ of R&D industry between 1990 and 1997.”