Web‐accessible molecular modeling with Rosetta: The Rosetta Online Server that Includes Everyone (ROSIE)
By Rocco Moretti, Sergey Lyskov, Rhiju Das, Jens Meiler, Jeffrey J. Gray. 2018
90 citations recorded by the source corpus.
Subfields: Computational Theory and Mathematics, Physical and Theoretical Chemistry, Spectroscopy
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In Computational Theory and Mathematics
In Physical and Theoretical Chemistry
Citations in the corpus
- Cryo-EM reveals an entangled kinetic trap in the folding of a catalytic RNA (2022, methodology): “The protocol described under “Manually setting up an autoDRRAFTER run” in the ROSIE web server was followed (36).”
- Blind prediction of noncanonical RNA structure at atomic accuracy (2017, methodology): “Efficient implementation of SWM Figure 1 illustrates the SWM procedure, which has been implemented in the Rosetta framework ( 13 ) and is also freely available through an online ROSIE (Rosetta Online Server that Includes Everyone) server (see Materials and Methods) ( 14 ).”
- InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs (2018, background): “cently moved to the ROSIE server (20)); docking with more than two proteins (ClusPro, GRAMM-X); and docking including degrees of flexibility (SwarmDock (21), ATTRACT (22), HADDOCK (23)).”
- FARFAR2: Improved de novo Rosetta prediction of complex global RNA folds (2020, unknown): “First, we describe how improvement of the general Rosetta codebase as well as consolidation of the FARFAR protocol have enabled development of a streamlined version of the method, named FARFAR2, and an improved webserver on the ROSIE platform (Lyskov et al., 2013; Moretti et al., 2018) at https://ro”