The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

By C. R. Buell, V. Joardar, M. Lindeberg, Jeremy D. Selengut, Ian T. Paulsen, M. Gwinn, R. Dodson, R. Deboy, A. S. Durkin, J. Kolonay and 34 more. Proceedings of the National Academy of Sciences of the United States of America, 2003

850 citations recorded by the source corpus.

Subfields: Plant Science

View Paper: https://www.semanticscholar.org/paper/8f18cf7d9d04306da4b21e1a345839c80707c347

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In Plant Science

1. Stijn Spaepen
2. J. Vanderleyden
3. R. Remans
4. Alan Collmer
5. J. Alfano
6. B. R. Glick
7. G. Berg
8. M. Bonkowski

Citations in the corpus

• Increasing biological complexity is positively correlated with the relative genome-wide expansion of non-protein-coding DNA sequences (2003, neutral): “92] Thermoplasma acidophilum 0.13 1509 1 564 905 [93] Brucella melitensis 0.13 3197 3 294 935 [94] Bacillus subtilis 0.13 4100 4 214 810 [95] Pseudomonas syringe pv. Tomato DC300 0.132 5615 6 397 126 [96] Buchnera aphidicola (Ap) 0.133 618 640000 [97] Methanococcus jannaschii 0.14 1738 1734000 [98] ”
• Pseudomonas genomes: diverse and adaptable. (2011, background): “The Pto DC3000 genome (Table 1) includes two plasmids of 73 and 67 kb (Buell et al., 2003).”
• Genome Sequence of Xanthomonas oryzae pv. oryzae Suggests Contribution of Large Numbers of Effector Genes and Insertion Sequences to Its Race Diversity (2005, background): “The proteins have the following functional domains or motifs: (1) a central region of near-perfect 34 amino acid (102 bp) repeats that vary in number; (2) leucine-rich repeats (LRRs); (3) nuclear localization signals (NLS); and (4) an acidic transcriptional activation domain (AAD).”
• Indole-3-acetic acid in microbial and microorganism-plant signaling. (2007, background): “IAA in phytopathogenesis, other than gall-or tumor-inducing pathogens Besides gall-and tumor-inducing plant pathogens, other phytopathogens like various Ps. syringae species also synthesize IAA (Glickmann et al., 1998; Buell et al., 2003).”
• Auxin and plant-microbe interactions. (2011, background): “savastanoi, which produces high amounts of IAA in culture medium (Glickmann et al. 1998; Manulis et al. 1998; Buell et al. 2003), the iaaM and iaaH genes are located on plasmid pIAA1 (Comai and Kosuge 1982).”
• Genome Rearrangement Distances and Gene Order Phylogeny in γ-Proteobacteria (2005, neutral): “…8 6 (Perna et al. 2001), 9 (Munson et al 2003, unpublished), 10 (Fleischmann et al. 1995), 11 7 (Stover et al. 2000), 12 (Nelson et al. 2002), 13 (Buell et al. 2003), 14 (May et al. 2001), 15 8 (Jin et al. 2002), 16 (Wei et al. 2003), 17 (Heidelberg et al. 2002), 18 (McClelland et al. 9 2001),…”
• Type III secretion system effector proteins: double agents in bacterial disease and plant defense. (2004, background): “tomato DC3000 revealed the presence of two additional harpins with a twodomain structure similar to that of HrpW (28).”