PathBLAST: a tool for alignment of protein interaction networks
By B. Kelley, Bingbing Yuan, Fran Lewitter, Roded Sharan, Brent R. Stockwell, Trey Ideker. Nucleic Acids Res., 2004
420 citations recorded by the source corpus.
Subfields: Molecular Biology
View Paper: https://www.semanticscholar.org/paper/8c41bfaf76c92eb2bf90c831f603974d803a733d
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In Molecular Biology
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Citations in the corpus
- Integrative approaches for finding modular structure in biological networks (2013, methodology): “For example, local network alignment tools such as PathBLAST 114 and NetworkBLAST 115 permit parallel comparisons of simple pathways (also known as linear paths) or sub-networks (also known as modules), respectively.”
- Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology (2007, methodology): “When performing LNA, Kelley et al. [ 6 ] have imposed a similar constraint.”
- Global alignment of multiple protein interaction networks with application to functional orthology detection (2008, background): “(10, 11) described how BLAST similarity scores and PPI network information could be used to identify conserved functional motifs.”
- Structure and dynamics of molecular networks: A novel paradigm of drug discovery: A comprehensive review (2012, background): “…al., 2007 PathBLAST Search of smaller linear pathways Finds smaller linear pathways in protein–protein interaction networks. http://www.pathblast.org Kelley et al., 2004 PINALOG Protein–protein interaction network Combines information from protein sequence, function and network topology.…”
- TALE: A Tool for Approximate Large Graph Matching (2008, background): “These include PathBlast [10], its successor NetworkBlast [16], MaWIsh [13], and Graemlin [4].”
- Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners (2008, background): “Understanding PPI network evolution across different species is an important problem [10-13].”