Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach.
By Matthias Scherf, A. Klingenhoff, Thomas Werner. Journal of Molecular Biology, 2000
300 citations recorded by the source corpus.
Subfields: Molecular Biology
View Paper: https://www.semanticscholar.org/paper/8a9bc24433f82107b4b91f745e274711fa633112
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Molecular Biology
- Thomas Werner
- Kil To Chong
- Mhaned Oubounyt
- Zakaria Louadi
- Hilal Tayara
- Martin G. Reese
- Andrew D. Smith
- Thomas A. Down
Citations in the corpus
- DWE: Discriminating Word Enumerator (2005, methodology): “Increasingly accurate methods for detecting transcription start sites (TSSs), such as Davuluri et al. (2001) and Scherf et al. (2000), enable localization of promoter regions.”
- DeePromoter: Robust Promoter Predictor Using Deep Learning (2019, methodology): “…predictors include: PromFind (Hutchinson, 1996) which used the k-mer frequency to perform the hexamer promoter prediction; PromoterInspector (Scherf et al., 2000) which identified the regions containing promoters based on a common genomic context of polymerase II promoters by scanning for…”
- The State of the Art of Mammalian Promoter Recognition (2003, methodology): “The first method of this category, which happens to be also the first representative of the new generation, was PromoterInspector.17 This method is based on a content analysis of promoter features represented by IUPAC-strings rather than specific transcription elements, and predicts regions containi”
- Computational detection and location of transcription start sites in mammalian genomic DNA. (2002, background): “A recent development in promoter recognition is the PromoterInspector program (Scherf et al. 2000).”
- Application of a Time-delay Neural Network to Promoter Annotation in the Drosophila Melanogaster Genome (2001, result): “In Table 2 the NNPP results are reported on this test set of genes in the Adh region (Ashburner et al., 1999) in comparison to CoreInspector (Scherf et al., 2000) and MCPromoter (Ohler et al., 1999), both evaluated in a recent annotation experiment (Reese et al., 2000a).”