Predicting subcellular localization of proteins using machine-learned classifiers
By Zhiyong Lu, Duane Szafron, R. Greiner, Paul Lu, David S. Wishart, Brett Poulin, John Anvik, Cam Macdonell, Roman Eisner. Bioinform., 2004
359 citations recorded by the source corpus.
Subfields: Biophysics, Microbiology, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/8820f3de11dea84a70e9acb0b39c76cf69081d47
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Biophysics
In Microbiology
In Molecular Biology
- Bernhard O. Palsson
- Ines Thiele
- David S. Wishart
- Chih-Hao Lu
- R. Greiner
- Jenn-Kang Hwang
- Chin-Sheng Yu
- J. Ludwig-Müller
Citations in the corpus
- Prediction of protein subcellular localization (2006, methodology): “For instance, some approaches make use of additional information like sequence profiles derived from PSI-BLAST[1, 8-10] or the ontology labels or the text annotations of the sequence databases[12, 19, 22].”
- Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations (2004, methodology): “These are the most accurate subcellular predictors across the widest set of organisms published to date (9).”
- MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction (2009, neutral): “Annotation-based predictors search the sequence for functional domains and motifs [24,25] or use textual information like Swiss-Prot keywords [26,27], Gene Ontology (GO) terms [28,29] or PubMed abstracts [30,31].”
- A protocol for generating a high-quality genome-scale metabolic reconstruction (2010, methodology): “48| Add notes and references to dead-end metabolites.”
- PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes (2010, methodology): “These subcategory localizations for a protein were identified using the SCLBLAST module, which infers localization by homology using criteria that are of measured high precision (Nair and Rost, 2002).”
- The Auxin Conjugate Hydrolase Family of Medicago truncatula and Their Expression During the Interaction with Two Symbionts (2008, background): “In maize, Ludwig-Müller and others (1997) observed an increase of the auxin indole3-butyric acid (IBA) in inoculated roots concomitant with the enzyme activity for IBA synthesis.”