Prediction of MEF2A-DNA interface by rigid body docking: a tool for fast estimation of protein mutational effects on DNA binding.
By F. Fanelli, S. Ferrari. 2006
30 citations recorded by the source corpus.
The protein-protein docking algorithm ZDOCK has been challenged for the first time to predict protein-DNA contacts. The computational approach defined in this study has proven effectiveness in fast in silico estimations of mutational effects of the MEF2A transcription factor on DNA binding.
Subfields: Molecular Biology
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In Molecular Biology
- Brian G. Pierce
- Zhiping Weng
- Shengyou Huang
- Xiaoqin Zou
- Alexandre M. J. J. Bonvin
- Sandor Vajda
- Björn Wallner
- D. Ritchie
Citations in the corpus
- Accelerating Protein Docking in ZDOCK Using an Advanced 3D Convolution Library (2011, unknown): “protein/DNA docking [17]), which resulted in 5.”
- ZRANK: Reranking protein docking predictions with an optimized energy function (2007, methodology): “One group has recently used ZDOCK scores to help determine the DD G’s from mutations at a protein–DNA interface 30 ; it is possible that ZRANK scores can be used in this context as well.”