Probability models for DNA sequence evolution

By Ziheng Yang. Heredity, 2004

422 citations recorded by the source corpus.

Subfields: Artificial Intelligence, Genetics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/7ed1b90c05681b02ac75ec9bc5a7da92cfa41d85

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Citations in the corpus

Wilcoxon-Mann-Whitney or t-test? On assumptions for hypothesis tests and multiple interpretations of decision rules (2010, background): “If the mating is more common (but still random) within subgroups, then this can lead to positive expected values of D (see e.g., Durrett, 2002, p. 154, Section 2.3).”
Cancer Evolution: Mathematical Models and Computational Inference (2014, background): “Population genetics provides a well-developed mathematical theory of evolution (Durrett 2002; Ewens 2004), and many of these models and techniques have been applied to cancer.”
A coalescent model for the effect of advantageous mutations on the genealogy of a population (2004, methodology): “From the values of an and bn in (4.4), which can be found in section 4.1 of Durrett (2002), we see that the standard deviation of the numerator of Tajima’s D-statistic is O(1) when the genealogy is given by Kingman’s coalescent.”
The Λ-coalescent speed of coming down from infinity (2008, background): “, [12] or [14]) while in the general case, one should aim for good approximations.”
Population Dynamics and Random Genealogies (2008, methodology): “Now let us compute the expectation of the absorption time, as is done in Ref.[35].”
Limit Points of Endogenous Misspecified Learning (2020, neutral): “2.3.20 in Durrett (2008)) that P « 8 č t“1 8 ď s“t Es ff ě P ” Z̃ P B||q´p˚a ||{K1 pq ´ p ˚ aq ı ą 0 .”
ABGD, Automatic Barcode Gap Discovery for primary species delimitation (2012, background): “In the Moran model, the number of species we follow is n s and is held constant through time by replenishing instanta-neously every species becoming extinct (Hubbell 2001; Durrett 2008).”