SE(3)-equivariant prediction of molecular wavefunctions and electronic densities
By Oliver T. Unke, Mihail Bogojeski, Michael Gastegger, Mario Geiger, Tess E. Smidt, Klaus‐Robert Müller . 2021
127 citations recorded by the source corpus.
Machine learning has enabled the prediction of quantum chemical properties with high accuracy and efficiency, allowing to bypass computationally costly ab initio calculations. Instead of training on a fixed set of properties, more recent approaches attempt to learn the electronic wavefunction (or density) as a central quantity of atomistic systems, from which all other observables can be derived. This is complicated by the fact that wavefunctions transform non-trivially under molecular rotations, which makes them a challenging prediction target. To solve this issue, we introduce general SE(3)-equivariant operations and building blocks for constructing deep learning architectures for geometric point cloud data and apply them to reconstruct wavefunctions of atomistic systems with unprecedented accuracy. Our model achieves speedups of over three orders of magnitude compared to ab initio methods and reduces prediction errors by up to two orders of magnitude compared to the previous state-of-the-art. This accuracy makes it possible to derive properties such as energies and forces directly from the wavefunction in an end-to-end manner. We demonstrate the potential of our approach in a transfer learning application, where a model trained on low accuracy reference wavefunctions implicitly learns to correct for electronic many-body interactions from observables computed at a higher level of theory. Such machine-learned wavefunction surrogates pave the way towards novel semi-empirical methods, offering resolution at an electronic level while drastically decreasing computational cost. Additionally, the predicted wavefunctions can serve as initial guess in conventional ab initio methods, decreasing the number of iterations required to arrive at a converged solution, thus leading to significant speedups without any loss of accuracy or robustness.
Subfields: Materials Chemistry, Molecular Biology, Physical and Theoretical Chemistry
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Materials Chemistry
In Molecular Biology
- Francesca Grisoni
- Kenneth Atz
- Gisbert Schneider
- Yi Liao
- Tess E. Smidt
- Roderick E. Hubbard
- Markus Hartenfeller
In Physical and Theoretical Chemistry
Citations in the corpus
- QMugs, quantum mechanical properties of drug-like molecules (2022, unknown): “…progress has been made in quantum-based machine learning (QML) methods 4 , which aim to accurately and computationally inexpensively predict the governing properties of atomistic systems, such as energies and forces 5–12 , dipole moments 13 , wave functions 14,15 and electron densities 16,17 .”
- Geometric deep learning on molecular representations (2021, background): “predicting several quantum chemical properties such as energies [35, 36, 38, 39, 93–95], interatomic potentials for molecular dynamics simulations [37, 38, 96], and wave-functions [40].”
- Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphs (2022, background): “Equivariant neural networks [72, 43, 80, 23, 50, 74, 4, 38, 65, 63, 77, 5, 71, 46, 51] operate on geometric tensors like type-L vectors to achieve equivariance.”
- EquiformerV2: Improved Equivariant Transformer for Scaling to Higher-Degree Representations (2023, unknown): “2 Related Works SE(3)/E(3) -Equivariant GNNs. Equivariant neural networks [5,7,11–18 , 31– 38] use equivariant irreps features built from vector spaces of irreducible representations ( irreps Invariant GNNs. Prior works [4,8,43–51] extract invariant information from 3D atomistic graphs and operate…”