Coiled Coil Domains: Stability, Specificity, and Biological Implications

By J. Mason, K. Arndt. ChemBioChem, 2004

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Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions (2013, background): “Coiled-coil regions, with their characteristic heptad repeat pattern (14), are an example of non-zeroth order correlations in protein amino acid sequences.”
Structure and interactions of biological helices (2007, background): “Various aspects of the studies of such structures have been described in numerous reviews see, e.g., Vologodskii and Cozzarelli 1994 and Mason and Arndt 2004 .”
Crystal structure of the archaeal heat shock regulator from Pyrococcus furiosus: a molecular chimera representing eukaryal and bacterial features. (2007, background): “Charged residues at most e and g positions leading to rich inter-helical electrostatic interactions also contribute numerous interactions to the zipper-like coiled coil.(25,26)”
APCluster: an R package for affinity propagation clustering (2011, methodology): “Those seven residues are usually annotated with letters a–g, where positions a and d are often occupied by hydrophobic residues and positions e and g are often occupied by charged residues (Mason and Arndt, 2004). Mahrenholz et al. (2011) have studied which sequence characteristics determine whether”