Mesquite: a modular system for evolutionary analysis. Version 2.6

By Wayne P. Maddison, D. Maddison. 2009

9,468 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/7a6142cfa79cc01ceced5e144bd0e01a0f241a74

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Citations in the corpus

Phylogeny of Branchiopoda (Crustacea) - Character Evolution and Contribution of Uniquely Preserved Fossils (2009, methodology): “…was constructed in NDE, a Nexus Data Editor program for Windows provided freely by Rod Page (University of Glasgow), modifi ed slightly in Mesquite (MADDISON & MADDISON 2009), exported to TNT (Tree analysis using New Technology), subsidized by the Willi Hennig Society (GOLOBOFF et al. 2008), where…”
Enclosed nests may provide greater thermal than nest predation benefits compared with open nests across latitudes (2017, methodology): “Phylogenetic trees were obtained from www.birdtree.org (Jetz et al. 2012) using the Hackett et al. (2008) backbone and imported into program Mesquite (Maddison & Maddison 2011) where a majority rules consensus tree was constructed based on 1000 trees (Fig.”
Phylogenetic Analysis of Araucariaceae: Integrating Molecules, Morphology, and Fossils (2013, methodology): “The morphological matrix was assembled with the aid of Mesquite software (Maddison and Maddison 2009).”
Climate cooling promoted the expansion and radiation of a threatened group of South American orchids (Epidendroideae: Laeliinae) (2010, methodology): “…by guest on 26 July 2018 inferring the ranges of all ancestral nodes on the phylogeny: Fitch parsimony as implemented in MESQUITE, version 2.72 (Maddison & Maddison, 2009) and statistical dispersal-vicariance analysis implemented in S-DIVA (Nylander et al., 2008a; Yu, Harris & He, 2010).”
Molecular phylogeny of the mega‐diverse rove beetle tribe Staphylinini (Insecta, Coleoptera, Staphylinidae) (2010, methodology): “0a11 (Rambaut 2002) for initial manual alignment and finally exported to Mesquite 2.71 (Maddison & Maddison 2009) for further alignment and other analyses.”
Diversity of fungal endophytes in leaves and stems of wild rubber trees (Hevea brasiliensis) in Peru (2010, methodology): “The closest hit sequences were then downloaded in FASTA format and aligned with the sequences produced for this study using MAFFT 6.0 (Katoh & Hiroyuki 2008) and later refined by hand using Mesquite 2.6 (Maddison & Maddison 2009).”
The slowest fish: Swim speed and tail-beat frequency of Greenland sharks (2012, unknown): “, 2003) with the software Mesquite (Maddison and Maddison, 2010).”