A Probabilistic Functional Network of Yeast Genes

By Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward M. Marcotte. Science, 2004

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Protein networks in disease. (2008, methodology): “A first set of methods (Jansen et al. 2003; von Mering et al. 2003; Bader et al. 2004; Lee et al. 2004; Myers and Troyanskaya 2007) was developed to clean the noise from raw interaction measurements, leading to higherconfidence networks with quantitative measures of accuracy associated with each i”
Extensive complementarity between gene function prediction methods (2016, background): “Integrating the individual networks resulted in gene modules that were more functionally consistent (Lee et al., 2004; von Mering et al., 2005) and could thus more accurately predict gene function (Troyanskaya et al., 2003; Hu et al., 2009) or phenotypic effects of gene perturbation (Lee et al.,…”