AFNI: software for analysis and visualization of functional magnetic resonance neuroimages.

By Robert W. Cox. 1996

Subfields: Cognitive Neuroscience, Radiology, Nuclear Medicine and Imaging, Medical Imaging

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Cognitive Neuroscience

1. Kathrina de Villa
2. E. Pang
3. Margot J. Taylor
4. Sarah I. Mossad
5. M. Vandewouw
6. Molly S. Hermiller

In Radiology, Nuclear Medicine and Imaging

1. Kathrina de Villa
2. E. Pang
3. Margot J. Taylor
4. Sarah I. Mossad
5. M. Vandewouw
6. Molly S. Hermiller

In Medical Imaging

1. Kathrina de Villa
2. E. Pang
3. Margot J. Taylor
4. Sarah I. Mossad
5. M. Vandewouw
6. Molly S. Hermiller

Citations in the corpus

• Causal Evidence for the Role of Neuronal Oscillations in Top-Down and Bottom-Up Attention (2019, unknown): “The anatomical image had the neck removed (AFNI; Cox, 1996), manual reorientation to the anterior commissure, segmentation with mean bias correction, and skull stripping (FSL 4.1.9, fsl.fmrib. ox.ac.uk/fsl/).”
• Frontoparietal Hubs Leverage Probabilistic Representations and Integrated Uncertainty to Guide Cognitive Flexibility (2025, unknown): “10E ).”
• Intracranial EEG referencing for large-scale category-selective mapping in the human ventral occipito-temporal cortex (2025, unknown): “The cortical surface used to display group maps was obtained from segmentation of the Colin27 brain from AFNI ( Cox, 1996) which is aligned to the Talairach space.”
• Effects of continuous versus intermittent theta-burst TMS on fMRI connectivity (2024, methodology): “Imaging analysis was done using AFNI (Cox, 1996) and Matlab (The MathWorks, Inc. Natick, MA, United States).”
• Characterising the spatial and oscillatory unfolding of Theory of Mind in adults using fMRI and MEG (2022, methodology): “Standard Analysis of Functional NeuroImages (AFNI, Cox, 1996; Cox and Hyde, 1997), FreeSurfer (Dale et al., 1999) and FMRIB Software Library (FSL, Jenkinson et al., 2012) tools were used to process fMRI data.”
• Neural Mechanisms of Bidirectional Visuo‐Linguistic Transformation in Interactive Communication (2026, unknown): “Preprocessing was performed using AFNI (Cox 1996; Cox and Hyde 1997), FSL 6.0.7 (Jenkinson et al. 2012), and custom MATLAB R2021b scripts.”