Inaugural Article: Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

By J. Mccarren, Jonathan Becker, D. Repeta, Yan Shi, Carolyn A. Young, R. Malmstrom, Sallie W. Chisholm, E. Delong. 2010

396 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/751ea21432301d1e9f4b77fa6adb5b519c9ba0bc

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Citations in the corpus

Interactions between sunlight and microorganisms influence dissolved organic matter degradation along the aquatic continuum (2018, background): “3C; McCarren et al. 2010; Satinsky et al. 2014; Ward et al. 2017).”
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system (2016, methodology): “…was determined by (1) searching all predicted ORFs in a genome with Pfam 35 , TIGRfam 34 , Panther 69 and custom HMM proﬁles (Supplementary Data 8 and 12) of marker genes for speciﬁc pathways using hmmscan 36 , and (2) assessment of complete pathways for metabolic transformations using ggKbase.”
Molecular insights into the microbial formation of marine dissolved organic matter: recalcitrant or labile? (2014, background): “Therefore, non-labile DOC in the environment can be further degraded and transformed by prolonged incubation, changes in the microbial community (e.g. McCarren et al., 2010; Herlemann et al., 2014) or photodegradation (Gonsior et al., 2009; Rossel et al., 2013).”
Computational meta'omics for microbial community studies (2013, background): “…will be needed to ensure the correctness of these challenging models; some studies of the latter with respect to natural long-term dynamics (McCarren et al , 2010; Gajer et al , 2012; Zhao et al , 2012) and short-term perturbations (Dethlefsen and Relman, 2011; Ubeda et al , 2013) have…”
Spatiotemporal distributions of rare bacterioplankton populations indicate adaptive strategies in the oligotrophic ocean (2013, background): “McCarren et al. (2010) saw a similar result with chemostat studies comparing amended seawater with unamended seawater from the Hawaii Ocean Time-series site in the Pacific Ocean.”
ANOVA-Like Differential Expression (ALDEx) Analysis for Mixed Population RNA-Seq (2013, methodology): “Thus while non-parametric bootstrapping has been widely adopted in the marine metagenomics community (where a defined protocol is followed [20,46-48]) it is unlikely to be adopted for use by the wider community.”