USING THE AMOVA FRAMEWORK TO ESTIMATE A STANDARDIZED GENETIC DIFFERENTIATION MEASURE

By P. Meirmans. Evolution; international journal of organic evolution, 2006

662 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/72f555203197c33197e9dfa4cb4b62f84b603186

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Genetics

In Molecular Biology

Citations in the corpus

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update (2012, methodology): “0b22 (Meirmans and Van Tienderen, 2004).”
Phylogeography of a widespread Asian subtropical tree: genetic east–west differentiation and climate envelope modelling suggest multiple glacial refugia (2014, methodology): “FSTmax was calculated with fstat after recoding the data using RecodeData 0.1 (Meirmans, 2006).”
Assessment of the Genetic Diversity in Forest Tree Populations Using Molecular Markers (2014, methodology): “For such cases, “standardized” genetic differentiation metrics’ have been suggested ([56,58,60]); but, see also the recent publication on the topic by Whitlock [61], who emphasized the continuous use of FST for intra-specific differentiation estimation when the mutation rate is small (relative to ge”
Deriving genotypes from RAD-seq short-read data using Stacks (2017, methodology): “At the haplotype level, the populations are again compared pairwise, providing several F ST statistics, including φ ST and F ST’46,47 .”
Footprints on water: the genetic wake of dispersal among reefs (2007, background): “Hedrick (2005) suggested a simple way to standardize FST that would allow for such comparisons (see also Meirmans 2006 for software that implements an improved way to do this).”
Climate change cascades: Shifts in oceanography, species' ranges and subtidal marine community dynamics in eastern Tasmania (2011, methodology): “…Strait and d AD (allelic diversity — the number of alleles sampled per site) are presented as means olecular Variance in Arlequin 3.11 and standardized according to Meirmans (2006). consequences, particularly in rural regions given that the major ports for these fisheries are distributed widely.”
Population genetics, larval dispersal, and connectivity in marine systems (2009, neutral): “Although it is possible to standardize F ST values to account for marker heterozygosity (Hedrick 2005, Meirmans 2006) or to estimate genetic population differentiation directly (Jost 2008), we were not able to apply any of these adjustments to our analysis because the standardizations require raw…”
Fine-scale spatial and temporal genetic structure of Atlantic cod off the Atlantic coast of the USA (2010, methodology): “We calculated the standardized measure of genetic differentiation G’ST (Hedrick 2005) for each of the 3 types of markers (microsatellites, PanI and SNPs), by dividing the observed FST value by its theoretical maximum, Fmax, using the program RECODE DATA v. 0.1 (Meirmans 2006).”