Next Generation Simulation Tools: The Systems Biology Workbench and BioSPICE Integration

By H. Sauro, Michael Hucka, A. Finney, Cameron Wellock, H. Bolouri, J. Doyle, Hiroaki Kitano. Omics, 2003

320 citations recorded by the source corpus.

Citations in the corpus

Diversity in times of adversity: probabilistic strategies in microbial survival games. (2005, unknown): “, 2004), and evolutionary game theory, an important addition to the Systems Biology toolbox (Kitano, 2002; Levchenko, 2003; Sauro et al., 2003) because of its power to relate the fitness of cellular design and behaviour to environmental and ecological dynamics (Wolf and Arkin, 2003).”
Teleost fish with specific genome duplication as unique models of vertebrate evolution (2010, unknown): “The effects of gene duplications/losses on the functions of the pathway may be predicted using in silico pathway simulation programs (e.g., Sauro et al. 2003; Nagasaki et al. 2003, 2009).”
BioPAX – A community standard for pathway data sharing (2010, unknown): “However, BioPAX addresses this need by coor-dinating work (as described below) with the SBML and CellML mathematical modeling language communities 55,56 and a growing software tool set supporting biological process simulation 57 .”