Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome".

By Herve Tettelin, V. Masignani, M. Cieslewicz, C. Donati, Duccio Medini, N. Ward, Samuel V. Angiuoli, J. Crabtree, Amanda L. Jones, A. S. Durkin and 36 more. Proceedings of the National Academy of Sciences of the United States of America, 2005

2,426 citations recorded by the source corpus.

Subfields: Microbiology, Public Health, Environmental and Occupational Health

View Paper: https://www.semanticscholar.org/paper/6cb9ac149abff18f051eb749cb9db1bd18bca6c4

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

Citations in the corpus

The Pangenome: Diversity, Dynamics and Evolution of Genomes (2020, methodology): “Papers included in this summary span from 2005 [when the first pangenomes were described in S. agalactiae (Tettelin et al. 2005) and H. influenzae (Shen et al. 2005; Hogg et al. 2007)] through 2018.”
Computational pan-genomics: status, promises and challenges (2016, background): “With the number of sequenced genomes steadily increasing, it makes sense to re-think the idea of a reference genome [9, 10].”
Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches. (2011, background): “The problem is that the taxa recognized as species by bacterial systematics are extremely broadly defined, with enormous levels of divergence in physiology, genome content, and most importantly, ecology (Welch et al., 2002; Whittam & Bumbaugh, 2002; Tettelin et al., 2005; Lefébure & Stanhope, 2007; ”
Guidelines for the validation and application of typing methods for use in bacterial epidemiology. (2007, neutral): “Reproducibility has been documented experimentally during clinical microbiological usage [181,184].”
IMG: the integrated microbial genomes database and comparative analysis system (2011, methodology): “These computational, data management and analytical challenges can be alleviated by synthesizing genomic data using the ‘pangenome’ conceptual abstractions (35).”
NCBI prokaryotic genome annotation pipeline (2016, background): “(15) introduced the concept of pan-genome , aiming to provide a compact description of the full complement of genes of all the strains of a species.”
Rapid scoring of genes in microbial pan-genome-wide association studies with Scoary (2016, background): “The full complement of all genes among a set of genomes is referred to as the pan-genome [11, 12].”