Molecular Dynamics Simulations of Nucleic Acids with a Generalized Born Solvation Model

By Vickie Tsui and, David A. Case. 2000

381 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/6bacf219422a2afcb3b1e2199c6a613f908b8556

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In Molecular Biology

1. Elaine C. Meng
2. Eric F. Pettersen
3. Yue Yang
4. Sergio Ernesto Wong
5. Felice C. Lightstone
6. Irwin D. Kuntz
7. Scott R. Brozell
8. P. Therese Lang

Citations in the corpus

• Approaches to efficiently estimate solvation and explicit water energetics in ligand binding: the use of WaterMap (2013, positive): “99) between GB and PB solvation energies for over 200 RNA structures [36].”
• DOCK 6: combining techniques to model RNA-small molecule complexes. (2009, methodology): “…Hawkins, Cramer, and Truhlar model with parameters described by Tsui and Case, (2) Onufriev, Bashford, and Case model, and (3) Onufriev, Bashford, and Case model with modified parameters (Hawkins et al. 1995, 1996; Onufriev et al. 2000; Tsui and Case 2000; Feig et al. 2004; Onufriev et al. 2004).”