microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets
By D. Dieringer, Christian Schlötterer. 2003
1,654 citations recorded by the source corpus.
Subfields: Genetics, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/67c485a631c083473497d4ebd07293b8cc96962e
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In Genetics
In Molecular Biology
Citations in the corpus
- Phylogeography and genetic differentiation along the distributional range of the orchid Epidendrum fulgens: a Neotropical coastal species not restricted to glacial refugia (2011, methodology): “…the number of alleles (A), number of private alleles (PA), allelic richness (AR), expected (HE) and observed (HO) heterozygosity, and the inbreeding coefficient f (Weir & Cockerham, 1984), calculated using the programs fstat 2.9.3.2 (Goudet, 1995) and msa 4.05 (Dieringer & Schlötterer, 2003).”
- Genetic diversity and taxonomy: a reassessment of species designation in tuatara (Sphenodon: Reptilia) (2010, methodology): “…the utility of the microsatellites for tuatara phylogenetic analysis, a minimum evolution tree of individuals as well as populations (not shown) was constructed in MEGA 3.1 (Kumar et al. 2004) using Nei’s Da distance (Nei et al. 1983) calculated with MSA 4.05 (Dieringer and Schlötterer 2003).”
- Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. (2006, background): “…such as ARLEQUIN (Schneider et al. 2000), FSTAT (Goudet 1995), GENEPOP (Raymond & Rousset 1995), GENETIX (Belkhir et al. 1998) and MICROSATELLITE ANALYZER (Dieringer & Schlötterer 2003), include tests for gametic disequilibrium by searching for correlations between alleles at different loci.”
- Geographic structure, genetic diversity and source tracking of Spartina alterniflora (2007, methodology): “…from possible post-introduction genetic change, we calculated and bootstrapped (based on 1000 replicate calculations) the variance in the proportion of shared alleles (Dps) across sample locations using microsatellite analyzer software (Bowcock et al., 1994; Dieringer & Schlötterer, 2002).”
- Anthropogenic and natural disturbance lead to differing patterns of gene flow in the Rocky Mountain tailed frog, Ascaphus montanus. (2010, neutral): “05 (Dieringer and Schlötterer, 2003).”