CANOCO 4.5 Reference Manual and CanoDraw for Windows User's Guide: Software for Canonical Community Ordination

By C. T. ter Braak, P. Šmilauer. 2002

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Citations in the corpus

Habitat preferences of oak-feeding xylophagous beetles in a temperate woodland: implications for forest history and management (2009, methodology): “To test for relationship between the composition of samples and environmental variables, we used redundancy analysis (RDA), a linear constrained ordination method that relates the species composition of samples to external predictors, in CANOCO v. 4.51 (ter Braak and Smilauer 2002).”
Saproxylic beetle assemblages related to silvicultural management intensity and stand structures in a beech forest in Southern Germany (2008, methodology): “We also used canonical correspondence analysis (CCA) with the forward selection option for environmental variables in order to determine which environmental variables were significant in explaining the variation in species composition among the samples using CANOCO 4.5 (Ter Braak and Smilauer 2002).”
Species-specific climate sensitivity of tree growth in Central-West Germany (2009, methodology): “RDA was conducted using the program CANOCO (Version 4.5, ter Braak and Smilauer 2002).”
The significance of hydroperiod and stand maturity for pool-breeding amphibians in forested landscapes (2006, methodology): “Biplot scores of the breeding pools (i.e., samples) on the forest composition and structure gradients were then used as independent variables in regression analysis (ter Braak and Smilauer 2002).”
Microbial community structure and ecology of subglacial sediments in two polythermal Svalbard glaciers characterized by epifluorescence microscopy and PLFA (2007, methodology): “The programs Canodraw 4.0. and Canopost (ter Braak and Šmilauer 2002) were used for graphical presentation of ordination results.”
Linking biotopes to invertebrates in rivers: Biological traits, taxonomic composition and diversity (2012, methodology): “Redundancy analyses (RDAs) were run with Canoco 4.5 (ter Braak and Smilauer, 2002) to test for the effect of the presence of different river biotope types on macroinvertebrate taxonomic composition (at different resolutions) and trait profiles, within rivers and for all rivers together.”
Tree and stand level variables influencing diversity of lichens on temperate broad-leaved trees in boreo-nemoral floodplain forests (2008, background): “In all statistical analyses, the cover values of lichens and bryophytes were square-root transformed (ter Braak and Šmilauer 2002), and the number of lichen species and variable ‘Circumference’ were log-transformed.”
From Classical to Canonical Ordination (2012, methodology): “The mathematics behind such projections is described in Legendre and Legendre (1998, Section 9.1.9) and ter Braak and Šmilauer (2002).”
Micro‐geomorphology determines community structure of biological soil crusts at small scales (2010, unknown): “The distribution of BSCs taxa as a function of environmental conditions was examined using canonical correspondence analysis (CCA), performed in CANOCO (ter Braak and Smilauer, 2002).”
Spatial distribution patterns of the gorgonians Eunicella singularis, Paramuricea clavata, and Leptogorgia sarmentosa (Cape of Creus, Northwestern Mediterranean Sea) (2011, methodology): “The relationships among gorgonian abundance and environmental and spatial variables were analyzed by redundancy analysis (RDA) (ter Braak 1994) using the ordination software Canoco 4.5 (ter Braak and Smilauer 2002).”
Importance of boreal grasslands in Sweden for butterfly diversity and effects of local and landscape habitat factors (2007, methodology): “1 C Statistical analyses Multivariate statistical analyses were performed with the CANOCO 4.5 software package (ter Braak and Smilauer 2002) using multivariate methods based on linear assumptions, as the beta-diversity in the data was relatively low (Leps and Smilauer 2003).”
Vascular plant and Orthoptera diversity in relation to grassland management and landscape composition in the European Alps (2007, methodology): “The landscape variables were derived from a detailed vector-based land-use map (SIAT, Servizio Urbanistion e Tutela del Territorio, Trento, Italy).”
Multivariate analyses in microbial ecology (2007, methodology): “It is recommended to use linear methods when the gradient length is o 3 SD, unimodal methods when it is 4 4 SD, and any method for intermediate gradient lengths (ter Braak & Smilauer, 2002).”