Biodynamic ontology: applying BFO in the biomedical domain.
By Pierre Grenon, Barry Smith, Louis J. Goldberg. Studies in Health Technology and Informatics, 2004
412 citations recorded by the source corpus.
View Paper: https://www.semanticscholar.org/paper/628bb7664cba27c94022b0f563a74dd9c9ea3d2d
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
- C. Mungall
- Barry Smith
- Werner Ceusters
- Marcus C. Chibucos
- L. Cooper
- Cornelius Rosse
- Gene Ontology Consortium
- Judith A. Blake
Citations in the corpus
- The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses (2012, methodology): “There are currently >100 ontology projects using BFO as common upper-level framework, including the ontologies within the OBO Foundry (Grenon et al. 2004, Arp and Smith 2008).”
- Evolution of the Sequence Ontology terms and relationships (2010, methodology): “BFO divides continuants into independent continuants and dependent continuants.”
- The Foundational Model of Anatomy Ontology (2008, background): “If one is to respect the definition of ontology cited earlier [36], then we must sort the entities which exist in the anatomy domain of biomedical reality into a taxonomy of types, choosing a perspective in which we selectively see these entities.”
- Concept annotation in the CRAFT corpus (2012, methodology): “Details in the Methods section. d The Open Biomedical Ontology consortium has agreed to use the Basic Formal Ontology (BFO) [74] as the upper-level ontology with which the domain-specific OBOs will be integrated, and in the BFO, an independent continuant, which encompasses most straightforward…”
- Standardized description of scientific evidence using the Evidence Ontology (ECO) (2014, background): “If ECO formally becomes an extension of IAO, then it will by inheritance also be an extension of BFO.”
- The Ontology for Biomedical Investigations (2016, methodology): “Therefore, the class material entity was created in BFO at the request of OBI developers as the union of object , fiat object part and object aggregate .”
- Relations in biomedical ontologies (2005, background): “We are thus clearly dealing here with two complementary - space-focused and time-focused - views of the same underlying subject matter, with determinate logical and ontological connections between them [16].”