Heteropolymer freezing and design: Towards physical models of protein folding

By Vijay S. Pande, A. Grosberg, Toyoichi Tanaka. 2000

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Simulating chemistry using quantum computers. (2010, background): “Although final Hamiltonians have been proposed for various problems related to computer science (41,56,93,92,29), only recently we derived constructions (102) for problems of chemical interest such as the lattice heteropolymer problem (100, 88, 75), an np-hard problem (52).”
Connecting the Sequence-Space of Bacterial Signaling Proteins to Phenotypes Using Coevolutionary Landscapes (2016, background): “…to stability considerations, H ð s Þ ¼ b E ð s Þ where E ð s Þ is the energy of the folded protein with respect to the unfolded state and b ¼ ð k B T sel Þ (cid:2) 1 is the inverse of the evolutionary selection temperature from protein folding theory (Pande et al. 1997, 2000; Morcos et al. 2014).”