MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5′ region

By A. Mallory, B. Reinhart, M. Jones-Rhoades, Guiliang Tang, Phillip D. Zamore, M. Barton, David P. Bartel. EMBO Journal, 2004

707 citations recorded by the source corpus.

Subfields: Plant Science

View Paper: https://www.semanticscholar.org/paper/5bbbdfcbb31eb17d4e83caae2f4b86a40b1a4651

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In Plant Science

Citations in the corpus

The miRNA156/157 recognition element in the 3' UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings. (2007, background): “Studies on pairing requirements between miRNA and its target suggest that mismatches to the 5¢ region of the miRNA lower the efficiency of miRNA binding to the target and subsequently its down-regulation (Doench and Sharp, 2004; Kiriakidou et al., 2004; Mallory et al., 2004; Parizotto et al., 2004; ”
Functional diversity of miRNA in plants (2007, background): “initiation, organ polarity regulation (M, T) [32,62]”
Posttranscriptional Induction of Two Cu/Zn Superoxide Dismutase Genes in Arabidopsis Is Mediated by Downregulation of miR398 and Important for Oxidative Stress Tolerance[W] (2006, background): “Plant miRNAs generally direct their target mRNAs for endonucleolytic cleavage (Llave et al., 2002; Tang et al., 2003; Mallory et al., 2004, 2005; Allen et al., 2005; Axtell and Bartel, 2005; Guo et al., 2005; Schwab et al., 2005; Sunkar et al., 2005).”
Gene silencing in plants using artificial microRNAs and other small RNAs. (2008, background): “These conclusions are supported by mutational analysis of miRNAs and their targets (Emery et al., 2003; Mallory et al., 2004; Palatnik et al., 2007).”
Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa. (2010, background): “Furthermore, any mismatch other than the G:U wobble in position 2–7 of the 5# end of an miRNA is penalized by an extra 0.5 to reflect the importance of complementarity to the miRNA 5# end for target site function (Mallory et al., 2004; Brennecke et al., 2005; Lim et al., 2005).”
Functions of microRNAs and related small RNAs in plants (2006, background): “Later experiments showed that the phb-d and phv-d mutations decreased miRNA-directed cleavage efficiency and attributed the developmental defects of phb-d and rev-d mutants to this change and not to changes in protein activit”
MicroRNAS and their regulatory roles in plants. (2006, methodology): “(b) Plants expressing miR166-resistant PHB have radialized, reduced leaves with adaxial characteristics all around the circumference of the leaf (87).”
Most mammalian mRNAs are conserved targets of microRNAs. (2008, background): “Selective maintenance of sites with a bulge in the site but not those with a bulge in the miRNA corresponds well with previous analyses of plant miRNA targeting (Mallory et al. 2004).”
Expanding the MicroRNA Targeting Code: Functional Sites with Centered Pairing (2010, methodology): “Pairing to miRNA nt 2–21 was considered, assigning a 2-point penalty for each mismatch or alignment insertion/deletion (indel) within the miRNA core (nt 2–13) (Mallory et al., 2004), a 1-point penalty for each mismatch or insertion/ deletion outside the core or each G:U wobble within the core, and a”
Highly Specific Gene Silencing by Artificial MicroRNAs in Arabidopsis[W][OA] (2006, methodology): “In addition, the amiRNAs were designed with uridine at position 1 and, if possible, adenine at position 10, both of which are overrepresented among natural plant miRNAs and highly efficient siRNAs (Mallory et al., 2004; Reynolds et al., 2004).”
Plant microRNAs: new players in functional genomics (2013, positive): “The miR164-resistant cuc1 results in alterations in embryonic development (Mallory et al. 2004).”
Recent advances in ethylene research. (2009, background): “The HD-ZIP proteins have also been reported to be involved in hormone and light regulation, and developmental process affecting shoot polarity and floral meristem activity (McConnell et al., 2001; Johannesson et al., 2003; Mallory et al., 2004; Saddic et al., 2006; Manavella et al., 2006).”