DGGE coupled with ribosomal DNA gene phylogenies reveal uncharacterized fungal phylotypes

By Le Minh Duong, R. Jeewon, Saisamorn Lumyong, K. D. Hyde. 2006

139 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/5b648dadb625c25525fc297903421c55f14ae186

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

Citations in the corpus

Fifty years of marine mycology (2011, unknown): “May et al. (2001) Nikolcheva et al. (2005), Duong et al. (2006), and Seena et al. (2008).”
Diversity and potential antifungal properties of fungi associated with a Mediterranean sponge (2010, background): “2008). Future studies on internal sponge fungal diversity should therefore combine molecular techniques for direct evaluation of fungal diversity using total DNA extracted from sponges ( Duong et al. 2006; Seena et al. 2008).”
Bioactive secondary metabolites from endophytes and associated marine derived fungi (2011, unknown): “…biodiversity, by cultivationbased methods and modern molecular biological studies on environmental samples, such as denaturing gradient gelelectrophoresis (DGGE), indicate that our knowledge about the actual taxonomic diversity and species richness of fungi is still limited (Duong et al. 2006).”
Fungal endophytes: unique plant inhabitants with great promises (2011, unknown): “PCR–DGGE analysis recovered 14 taxonomic units from the studied leaves, thereby identifying taxa that were not recovered from morphological studies or culturing indicating that the respective endophytes may be unable to grow on artificial media (Duong et al. 2006).”
Diversity and structure of the fungal endophytic assemblages from two sympatric coastal grasses. (2008, unknown): “, 2005) and unculturable species (Duong et al., 2006) and several reports indicate more than 100 species of fungi may be associated with a single host species (Arnold et al.”
Phylogenetic diversity of endophytic Pestalotiopsis species in Pinus armandii and Ribes spp.: evidence from rDNA and β- tubulin gene phylogenies (2007, background): “A large number of studies have shown that many fungi exist as endophytes during part of their life cycle (e.g. Wang et al., 2005; Devarajan and Suryanarayanan, 2006; Duong et al., 2006; Gonthier et al., 2006).”
Endophytic and canker-associated Botryosphaeriaceae occurring on non-native Eucalyptus and native Myrtaceae trees in Uruguay (2010, unknown): “It would be interesting to apply techniques where DNA is isolated directly from samples (e.g. Guo et al. 2000, 2001; Nikolcheva and Bärlocher 2005; Duong et al. 2006; Seena et al. 2008; Tao et al. 2008; Curlevski et al. 2009; Nilsson et al. 2009), to reveal if other botryosphaericeous endophytes…”
Diversity of fungal endophytes in leaves and stems of wild rubber trees (Hevea brasiliensis) in Peru (2010, background): “…entire fungal endophytic community, environmental PCR techniques (e.g. DNA cloning: Guo et al. 2001; Arnold et al. 2007; Seena et al. 2008; DGGE or T-RFLP: Nikolcheva & Bärlocher 2005; Duong et al. 2006; Curlevski et al. 2009; or PCR product pyrosequencing: Nilsson et al. 2009) should be applied.”
Fungal diversity in wounded stems of Aquilaria malaccensis (2010, methodology): “Direct sequencing has been used in several other studies (e.g. DGGE, Duong et al. 2006; Tao et al. 2008; Clones libraries, Seena et al. 2008).”
Endophytic fungi in European aspen (Populus tremula) leaves—diversity, detection, and a suggested correlation with herbivory resistance (2010, background): “There have been several attempts to develop molecular methods to directly screen fungi in leaves (Duong et al. 2006; Seena et al. 2008), and soils (Curlevski et al.”
Diversity of endophytic fungi of Taxus globosa (Mexican yew) (2011, methodology): “For that purpose, methods using the extraction of the genomic DNA directly from tissues, coupled either with random cloning, denaturing gradient gel electrophoresis (DGGE), terminal restriction fragment length polymorphism (T-RFLP) analysis or amplified ribosomal DNA restriction analysis (ARDRA) can”
Phylogenetic diversity of culturable fungi from the deep-sea sediments of the Central Indian Basin and their growth characteristics (2010, methodology): “Direct sequencing of environmental samples would improve our understanding of the fungi present in deep seas as unculturable fungi would be revealed and many methods are becoming available (e.g. DGGE, Duong et al. 2006; Seena et al. 2008).”
The endophytic mycota associated with Vitis vinifera in central Spain (2011, unknown): “…belonging to asexual ascomycetes, rather than wood decay basidiomycetes, although some 3 recent papers have suggested that basidiomycetes constitute an important component of certain endophytic communities (Rungjindamai et al. 2008; Pinruan et al. 2010; Duong et al. 2006; Crozier et al. 2006).”
The endophytic mycobiota of the grass Dactylis glomerata (2007, methodology): “unculturable endophytes have been developed (Duong et al., 2006; Neubert et al., 2006).”
From morphology to molecular biology: can we use sequence data to identify fungal endophytes? (2011, methodology): “This type of direct sampling has been used to determine the occurrence of endophytes in a number of different hosts (e. g., Gao et al. 2005; Duong et al. 2006; U’Ren et al. 2009) and has revealed taxa that would not have been detected with the use of culturing.”
Phylogenetic diversity of endophyte assemblages associated with the tropical seagrass Enhalus acoroides in Thailand (2010, background): “…of new molecular techniques that extract DNA from samples such as DGGE, quantitative real time PCR, pyrosequencing (e.g. Guo et al. 2001; Duong et al. 2006; Seena et al. 2008; Tao et al. 2008; Curlevski et al. 2009, Nilsson et al. 2009) as well as the use of robust phylogenetic analyses…”
Diversity of fungal endophytes in shrubby medicinal plants of Malnad region, Western Ghats, Southern India (2008, methodology): “Duong et al. (2006) obtained 14 operational taxonomic units (OTUs), using DGGE, of fungi not normally isolated by conventional methodology from living leaves of Magnolia (Hyde & Soytong 2007).”
Endophytic fungi associated with lichens in Baihua mountain of Beijing, China (2007, methodology): “) Baillon was assessed based on DGGE coupled with sequence analysis of 18S rRNA gene (Duong et al., 2006).”