Assembly of seed-associated microbial communities within and across successive plant generations

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Heritability and Functional Importance of the Setaria viridis Bacterial Seed Microbiome (2020, methodology): “The quality of merged reads was accurately assessed and then sequences filtered accordingly using VSEARCH v.2.9.1 (Rognes et al. 2016) with a maximum expected error threshold of 1.”
Tomato seeds preferably transmit plant beneficial endophytes (2018, methodology): “After creating a set of representative sequences, chimeras were filtered via both de novo reference-based approaches while mapping high quality sequences (vsearch) (Rognes et al. 2016).”