Protein Conformational Dynamics Probed by Single-Molecule Electron Transfer

By Haw Yang, G. Luo, Pallop Karnchanaphanurach, T. Louie, I. Rech, S. Cova, L. Xun, Xiaohui S. Xie. Science, 2003

767 citations recorded by the source corpus.

Subfields: Atomic and Molecular Physics, and Optics, Biophysics, Physical and Theoretical Chemistry

View Paper: https://www.semanticscholar.org/paper/59a26d6631e303f5bbe5b3bb49605e4f143d0cd7

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In Atomic and Molecular Physics, and Optics

1. T. Ha
2. Ralf Metzler
3. Juan Trujillo
4. Joseph Klafter
5. Julian Lee
6. Ken A. Dill
7. Jochen S. Hub
8. Kingshuk Ghosh

In Biophysics

1. T. Ha
2. Ken A. Dill
3. Samuel C. Kou
4. Debashish Chowdhury
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In Physical and Theoretical Chemistry

1. Julian Lee
2. Kingshuk Ghosh
3. Steve Pressé
4. Juan Trujillo
5. Daniel M. Tartakovsky
6. Ken A. Dill

Citations in the corpus

• Single-molecule force spectroscopy reveals signatures of glassy dynamics in the energy landscape of ubiquitin (2006, background): “and the correlations of fluorescence lifetimes of conformations of the same protein molecul”
• Perspective on theories of non-Fickian transport in heterogeneous media (2009, background): “Similar non-Fickian behavior has been attributed to heterogeneity of ambient environments in areas as diverse as virus migration in cells [75], protein dynamics [89], transport of lipid granules in the cytoplasm of living yeast cells [85], fluctuations of stocks on financial markets [69], and animal”
• Analysis of single-molecule FRET trajectories using hidden Markov modeling. (2006, methodology): “In the realm of biophysics such modeling has been used extensively in the analysis of ion-channel data (10, 11), and very recently for single-molecule fluorescence data (12-15).”
• Principal component analysis for protein folding dynamics (2008, result): “These findings are consistent with earlier results obtained by Yang et al . from single molecule experiments,56 which also showed subdiffusive behavior.”
• Existence of mild solution for evolution equation with Hilfer fractional derivative (2015, background): “Introduction Nowadays, fractional calculus receives increasing attention in the scientific community, with a growing number of applications in physics, electrochemistry, biophysics, viscoelasticity, biomedicine, control theory, signal processing, etc(see [22,29] and the references therein).”
• Bayesian analysis of single‐molecule experimental data (2005, background): “The detailed dynamic information is particularly important for complex biomolecules that have intricate internal structures (Xie and Lu, 1999; Yang et al., 2003) as the Address for correspondence: Jun S. Liu, Department of Statistics, Harvard University, Science Center, One Oxford Street,…”
• Stochastic modeling in nanoscale biophysics: Subdiffusion within proteins (2008, background): “Recent single-molecule biophysics experiments [Yang et al. (2003), Kou and Xie (2004), Min et al. (2005)] reveal that subdiffusion may be quite prevalent in biological systems.”
• The restaurant at the end of the random walk: recent developments in the description of anomalous transport by fractional dynamics (2004, background): “Compelling evidence for broad time-scale distributions in protein conformational dynamics was reported recently, and modelled on the basis of the fractional Fokker–Planck equation (Yang et al 2003, Yang and Xie 2002).”
• Detection of Functional Modes in Protein Dynamics (2009, background): “[3,4], X-ray crystallography [5], as well as single-molecule fluorescence [6] or electron-transfer measurements [7].”