Phylogenomics resolves the timing and pattern of insect evolution

By Bernhard Misof, Shanlin Liu, Karen Meusemann, R. Peters, A. Donath, Christoph Mayer, P. Frandsen, J. Ware, Tomás Flouri, R. Beutel and 90 more. Science, 2014

2,414 citations recorded by the source corpus.

Subfields: Ecology, Evolution, Behavior and Systematics, Genetics

View Paper: https://www.semanticscholar.org/paper/5413d5ae4c9810efa60551ec6275ff1d56616748

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Ecology, Evolution, Behavior and Systematics

1. R. Beutel
2. S. Winterton
3. Michael Whiting
4. A. Newton
5. D. Badano
6. G. Edgecombe
7. H. Aspöck
8. D. Mckenna

In Genetics

1. R. Beutel
2. Alan R. Lemmon
3. E. Lemmon
4. Michael Whiting
5. A. Newton
6. U. Aspöck
7. R. Leschen
8. J. McHugh

Citations in the corpus

• FOSSIL CALIBRATIONS FOR THE ARTHROPOD TREE OF LIFE (2016, methodology): “Monophyly is established based on phylogenetic analysis of nuclear protein-coding genes (Regier et al., 2010, 2005; Sasaki et al., 2013), transcriptomes (Misof et al., 2014; Simon et al., 2012), and morphology (Legg et al., 2013).”
• BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics (2017, background): “Recent notable examples include extensive transcriptomics to increase species sampling to examine the evolution of insects (Misof et al. 2014; Peters et al. 2017) and spiders (Fernández et al.”
• Phylogeny of Myrmeleontiformia based on larval morphology (Neuropterida: Neuroptera) (2017, background): “Neuroptera display an astonishing diversity of larval morphology and life history, rivalling much larger orders in the variety of their ecological niches, reflecting their long evolutionary history and ancient phylogenetic origin which dates back to the late Carboniferous (Winterton et al., 2010) or”
• Evolution of lacewings and allied orders using anchored phylogenomics (Neuroptera, Megaloptera, Raphidioptera) (2018, background): “Other authors have estimated the origin of Neuroptera later during the Permian (Wiegmann et al., 2009; Misof et al., 2014), although based on the results presented here – and considering © 2017 The Royal Entomological Society, Systematic Entomology, 43, 330–354 the numerous derived fossil lacewing…”
• Third generation sequencing: technology and its potential impact on evolutionary biodiversity research (2016, neutral): “All Rights Reserved. http://dx.doi.org/10.1080/14772000.2015.1099575 Bleidorn, 2014; Johnson, Walden, & Robertson, 2013; Lemmon, Emme, & Lemmon, 2012; Misof et al., 2014; Moroz et al., 2014; Weitemier et al., 2014).”
• To be or not to be: postcubital vein in insects revealed by microtomography (2020, background): “Although thousands of fossil insects have been described over the last 20 years, these extinct taxa are included in phylogenetic analyses only rarely enough (Misof et al., 2014; Wang et al., 2016).”
• PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses. (2016, methodology): “However, PartitionFinder was written before the advent of phylogenomic datasets such as those produced by sequencing whole genomes (e.g., Jarvis et al. 2014) and transcriptomes (e.g., Misof et al. 2014), and remains too slow to be practical for use with these datasets.”
• The beetle tree of life reveals that Coleoptera survived end‐Permian mass extinction to diversify during the Cretaceous terrestrial revolution (2015, methodology): “40, 835–880 Misof et al. (2014) sampled eight terminals representing the four suborders of Coleoptera, two genera of Strepsiptera and 134 other taxa from groups outside Coleopterida.”
• Identifying conserved genomic elements and designing universal bait sets to enrich them (2017, methodology): “…of restriction enzyme-based (Baird et al. 2008; Elshire et al. 2011; Peterson et al. 2012), transcriptomic (Dunn et al. 2008; Smith et al. 2011; Misof et al. 2014) and targeted enrichment (Bi et al. 2012; Faircloth et al. 2012; Pe~nalba et al. 2014; Ali et al. 2015; Hoffberg et al. 2016;…”
• Species diversity of insects in Japan: Their origins and diversification processes (2017, background): “…and confined to the heavy snow and cool habitats of high altitude mountains in East Asia and North America (i.e. the Japanese Islands, the Korean Peninsula, southern Siberia, and western North America) straddling the Bering Strait (Klass et al. 2003; Schoville et al. 2013; Misof et al. 2014).”
• Anchored hybrid enrichment provides new insights into the phylogeny and evolution of longhorned beetles (Cerambycidae) (2018, background): “…genome sequencing (WGS; e.g. Niehuis et al., 2012; Prum et al., 2015), transcriptome sequencing (e.g. Bi et al., 2012; Kawahara & Breinholt, 2014; Misof et al., 2014; Kjer et al., 2015; Lei & Dong, 2016) or target enrichment (e.g. Faircloth et al., 2012; Lemmon et al., 2012; Smith et al., 2014;…”