Calculation of hydrodynamic properties of globular proteins from their atomic-level structure.

By J. García de la Torre, M. L. Huertas, B. Carrasco. Biophysical Journal, 2000

997 citations recorded by the source corpus.

Subfields: Cell Biology, Molecular Biology, Organic Chemistry

View Paper: https://www.semanticscholar.org/paper/518b6ba6213dfbab7b052ac0df0ab12497ceef99

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Cell Biology

1. Michele Vendruscolo
2. Peter Schuck
3. Pietro Sormanni
4. H. Erickson
5. F. Aprile

In Molecular Biology

1. David Baker
2. David E. Kim
3. Philip Bradley
4. Yang Zhang
5. Jeffrey J. Gray
6. Tanja Kortemme
7. Nikolaos G. Sgourakis
8. Frank DiMaio

In Organic Chemistry

1. Michele Vendruscolo
2. Peter Schuck
3. David Baker
4. Pietro Sormanni
5. H. Erickson
6. F. Aprile
7. Frances H. Arnold

Citations in the corpus

• The CamSol method of rational design of protein mutants with enhanced solubility. (2015, methodology): “In order to identify the peak corresponding to the nativemonomer, we compared the apparentRH values derived from the retention volumes of the gel filtration with the one obtainedwith the programHydroPRO [53].”
• Stability and kinetics of G-quadruplex structures (2008, methodology): “This is discussed in detail in the publications on the programs for calculating frictional properties (97,98,103).”
• Dynamics of proteins in solution (2019, methodology): “One approach to model these global contributions to protein dynamics is to calculate the diffusion tensor based on protein structures using software packages such as HYDROPRO (de la Torre et al., 2000).”
• On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation. (2003, methodology): “Both can be combined with other available prior knowledge, including binding constants or s-values of the interacting species, derived from ultracentrifugation experiments with protein variants, or under modified conditions, or from hydrodynamic consideration of simple geometric association models a”
• Size and Shape of Protein Molecules at the Nanometer Level Determined by Sedimentation, Gel Filtration, and Electron Microscopy (2009, methodology): “This analysis has been extended by Garcia De La Torre and colleagues (7).”
• Sampling bottlenecks in de novo protein structure prediction (2009, positive): “The theoretical diffusion coefficients and the hydrodynamic radius for the different-length CTPR proteins were calculated from the X-ray crystal structure coordinates using the program Hydropro version 7c∥.(20) We used the structures of CTPR8 (Protein Data Bank ID 2AVP)(18)”