A topology‐constrained distance network algorithm for protein structure determination from NOESY data
By Yuanpeng Janet Huang, Roberto Tejero, Robert Powers, Gaetano T. Montelione. 2005
132 citations recorded by the source corpus.
Subfields: Computational Theory and Mathematics, Molecular Biology
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Computational Theory and Mathematics
- R. Tejero
- Gaetano T. Montelione
- T. Ramelot
- Yuanpeng Janet Huang
- David Baker
- Ivan V. Anishchenko
- Sergey Ovchinnikov
- Frank DiMaio
In Molecular Biology
- Santrupti Nerli
- Nikolaos G. Sgourakis
- David Baker
- Sergey Ovchinnikov
- Gaetano T. Montelione
- Andrew C. McShan
- Frank DiMaio
- Ivan V. Anishchenko
Citations in the corpus
- De novo protein design by deep network hallucination (2020, methodology): “NOESY peak assignments were made automatically using Cyana 46,47 , together with the programs RPF and ASDP to guide manual correction of NOESY peak assignments 48,49 .”
- AlphaFold Models of Small Proteins Rival the Accuracy of Solution NMR Structures (2022, methodology): “…the Northeast Structural Genomics Consortium, as a primary validation tool since its development as a “NMR R factor” in 2005 (Huang et al., 2005; Huang et al., 2006; Raman et al., 2010; Huang et al., 2012; Rosato et al., 2012; Rosato et al., 2013; Rosato et al., 2015; Sala et al., 2019; Huang…”
- Protein structure determination by combining sparse NMR data with evolutionary couplings (2015, unknown): “Initial NOE-based distance constraints are generated from NOESY and chemical shift data using algorithms encoded in the ASDP program 20 .”
- Chemical shift-based methods in NMR structure determination (2018, methodology): “Briefly, the EC restraints are combined with the previously assigned backbone and sidechain NMR chemical shifts, and used to assign the NOESY cross-peaks using the ASDP program [133]; these assigned restraints are then used in the full simulated annealing structure determination protocol in CYANA [9”
- Combined automated NOE assignment and structure calculation with CYANA (2015, background): “…chemical shift assignments, e.g. NOAH (Mumenthaler and Braun 1995; Mumenthaler et al. 1997), ARIA (Nilges et al. 1997; Rieping et al. 2007), ASDP (Huang et al. 2006), KNOWNOE (Gronwald et al. 2002), CANDID (Herrmann et al. 2002a), PASD (Kuszewski et al. 2004), and AutoNOERosetta (Zhang et al.…”