CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs

By D. Dudekula, Amaresh Chandra Panda, Ioannis Grammatikakis, Supriyo De, K. Abdelmohsen, M. Gorospe. RNA Biology, 2016

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Circular RNA-protein interactions: functions, mechanisms, and identification (2020, background): “Reports show that circRNAs without any predicted binding sites also have the capacity to interact with proteins [90].”
CircAtlas: an integrated resource of one million highly accurate circular RNAs from 1070 vertebrate transcriptomes (2020, background): “Moreover, other interaction databases, such as the starBase [22] and the CircInteractome [23], may provide informative resources that may enable researchers to prioritize the promising candidates.”
Identification of HuR target circular RNAs uncovers suppression of PABPN1 translation by CircPABPN1 (2017, methodology): “Recent surveys have found that RBPs can potentially bind numerous circRNAs.(21,22) Here, we identified HuR-associated circRNAs using RIP-chip and RIP-RT-qPCR analyses, bioinformatic prediction, and in vitro binding assays (Figs.”
CSCD: a database for cancer-specific circular RNAs (2017, methodology): “CircInteractome explores the binding of microRNA and RNA binding proteins in circRNAs from circBase (27).”
The bioinformatics toolbox for circRNA discovery and analysis (2020, background): “For CircInteractome, the coordinates of a circRNA is based on circBase.”