A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data

By Simon B. Eickhoff, Klaas E. Stephan, Hartmut Mohlberg, Christian Grefkes, Gereon R. Fink, Katrin Amunts, Karl Zilles. NeuroImage, 2005

4,148 citations recorded by the source corpus.

Subfields: Cognitive Neuroscience, Radiology, Nuclear Medicine and Imaging

View Paper: https://www.semanticscholar.org/paper/4a7b8fb8cb69f53c6c2ac3ae518a974773240b94

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Cognitive Neuroscience

In Radiology, Nuclear Medicine and Imaging

Citations in the corpus

Brain mediators of cardiovascular responses to social threat, Part I: Reciprocal dorsal and ventral sub-regions of the medial prefrontal cortex and heart-rate reactivity (2009, background): “5 (Eickhoff et al., 2005), including the left and right corticomedial group (superior amgydala) reported most frequently in imaging studies of emotion (Wager et al.”
Mapping Human Cortical Areas in vivo Based on Myelin Content as Revealed by T1- and T2-weighted MRI (2011, methodology): “Volume-based cytoarchitectonic areas were obtained from the SPM Anatomy Toolbox (Eickhoff et al., 2005a) and were transformed from the original Colin27 space into the fsaverage volume space for accurate mapping to the fsaverage atlas surfaces.”
A quantitative meta-analysis and review of motor learning in the human brain (2013, methodology): “All results were anatomically labeled according to their most probable macroanatomical and cytoarchetectonic locations using the SPM Anatomy Toolbox (Eickhoff et al., 2005, 2006, 2007).”
DIFFUSION-WEIGHTED IMAGING TRACTOGRAPHY-BASED PARCELLATION OF THE HUMAN PARIETAL CORTEX AND COMPARISON WITH HUMAN AND MACAQUE RESTING STATE FUNCTIONAL CONNECTIVITY (2011, methodology): “DW-MRI data were preprocessed using tools from FDT (for Functional MRI of the Brain Diffusion Toolbox; part of FSL 4.1).”
Graph analysis of the human connectome: Promise, progress, and pitfalls (2013, neutral): “…recently, methods have been proposed that parcellate the brain according to datadriven clustering of resting-state or DWI measures (Johansen-Berg, et al., 2005; Anwander, et al., 2007; Nelson, et al., 2010; Power, et al., 2011; Yeo, et al., 2011), based on the assumption that each brain region…”
Coordinate-based ALE meta-analysis of neuroimaging data: A random-effects approach based on empirical estimates of spatial uncertainty (2009, background): “The regions, which showed a significant convergence of literature foci reported for finger-tapping experiments, corresponded anatomically [Eickhoff et al., 2005] to the motor cortex, the dorsal and ventral premotor cortices, the primary and secondary somatosensory cortices, the cerebellum and the th”
Mapping the human brain’s cortical-subcortical functional network organization (2018, neutral): “I) Right LGN identified using the Jülich atlas (Bürgel et al., 2006; Eickhoff et al., 2005), similar coordinates also reported in (Linzenbold et al., 2011; Marx et al., 2004; A. T. Smith et al., 2009).”
Parcellations and hemispheric asymmetries of human cerebral cortex analyzed on surface-based atlases. (2012, methodology): “Volumetric population-average architectonic maps were obtained from the Statistical Parametric Mapping (SPM) Anatomy Toolbox (Eickhoff et al. 2005; http:// www2.fz-juelich.de/inm/inm-1/spm_ anatomy_toolbox/).”
A probabilistic MR atlas of the human cerebellum (2009, methodology): “These include the atlas widget in FSLView (Smith et al., 2004), maximum-probability-maps in MRICroN (Rorden, 2007), and the Anatomy toolbox in SPM (Eickhoff et al., 2005).”
AFNI: What a long strange trip it’s been (2011, methodology): “AFNI already has a number of atlases built-in, including the San Antonio Talairach Daemon (Lancaster et al., 2000) and the Eickhoff–Zilles probabilistic atlas (Eickhoff et al., 2005), but each of these was incorporated by custom coding and manipulations.”
Correspondence of the brain's functional architecture during activation and rest (2009, background): “The development of an ontology for functional networks (28) and their hierarchy is likely to be of interest to nonclinical neuroscientists to complement other ontologies such as cytoarchitectonic mapping (29) and structural (e.”
Brain anatomy differences in childhood stuttering (2008, methodology): “…frontal ROIs were defined using probabilistic cytoarchitectonic maps available for BA44 and 45 (Amunts et al., 2004) and implemented in AFNI (Cox, 1996) (http://afni.nimh.nih.gov/afni/) based on postmortem cytoarchitectonic studies with stereotaxic information in MNI space (Eickhoff et al., 2005).”
Global connectivity of prefrontal cortex predicts cognitive control and intelligence (2012, methodology): “The sensory-motor locations were based on probabilistic cytoarchitecture obtained using AFNI TT_N27_CA_EZ_PMaps, which is derived from the SPM Anatomy toolbox (Eickhoff et al., 2005).”
A whole brain fMRI atlas generated via spatially constrained spectral clustering (2011, methodology): “de/inm/inm-1/spm_anatomy_toolbox) [Eickhoff et al., 2005], the Talairach and Tournoux (TT) atlas [Lancaster et al.”
Discovering event structure in continuous narrative perception and memory (2016, neutral): “…region defined above, we defined the angular gyrus as area PG (both PGa and PGp) using the maximum probability maps from a cytoarchitectonic atlas (Eickhoff et al., 2005), and we defined early auditory cortex as voxels within the Heschl’s gyrus region (Harvard-Oxford cortical atlas) with reliable…”