Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

By O. Jaillon, J. Aury, F. Brunet, Jean‐Louis Petit, N. Stange-thomann, E. Mauceli, L. Bouneau, Cécile Fischer, C. ozouF-cosTaz, A. Bernot and 51 more. Nature, 2004

1,970 citations recorded by the source corpus.

Subfields: Genetics, Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/49dc8e22aabc6ebb47fbba8f92b8bbd8588e9f40

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In Genetics

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Citations in the corpus

• Teleost fish with specific genome duplication as unique models of vertebrate evolution (2010, methodology): “4; note that the definition of DCS by Jaillon et al. 2004 and Kasahara et al. 2007 allows some extent of gene relocations; see the legend of Fig.”
• Synergy between sequence and size in Large-scale genomics (2005, background): “In the second pufferfish to be sequenced, Tetraodon nigroviridis , only 4,000 transposable-element copies are found in total — but this still represents 73 different types of elemen”
• The evolutionary significance of ancient genome duplications (2009, background): “However, all vertebrates seem to have shared two ancient WGD events, whereas all teleosts, and probably also eudicots, are derived from a lineage that experienced a WGD even”
• Advances and perspectives on the regulation and expression of piscine heat shock proteins (2011, neutral): “…following temperature stress has not been reported BC056709 Strausberg et al. (2002) Spotted green pufferfish CR656379 (hsc70) CR734665 (hsc70-1) Jaillon et al. (2004) Mangrove rivulus AY233001 Lee (2004) Japanese amberjack AB436469 (hsc70-2) (Unpublished) Japanese flounder…”
• The relationship between non-protein-coding DNA and eukaryotic complexity. (2007, background): “The increased annotation fidelity of vertebrate genomes reveals a clustering at the high end of the nc/tg spectrum, which includes the compact puffer-fish genomes.((53,69)) We suspect that recently sequenced genomes from lower eukaryotes, which are currently predicted to have high Problems and parad”
• From 2R to 3R: evidence for a fish-specific genome duplication (FSGD). (2005, background): “The most conclusive evidence for a complete genome duplication in ray-finned fishes came from the comparative analyses of the nearly complete Takifugu genome and in particular the recently determinedTetraodon genomewith the human genome.((28,29)) The approach taken by Jaillon et al.”
• Genome duplication in amphibians and fish: an extended synthesis (2011, methodology): “…Aparicio et al., 2002) and Medaka (Kasahara et al., 2007) and have been used to identify paleopolyploid events and the proto-karyotype of vertebrates (Panopoulou et al., 2003; Jaillon et al., 2004; Dehal & Boore, 2005; Panopoulou & Poustka, 2005; Nakatani et al., 2007; Putnam et al., 2008).”
• EGASP: the human ENCODE Genome Annotation Assessment Project (2006, methodology): “…cDNA or EST coverage of the transcriptome is shallow, single genome ab initio predictions play an important role in genome annotation, such as those obtained, for example, by the programs GENSCAN [18] and GENEID [19] in the initial annotation of the genome of the fish Tetraodon nigroviridis [20].”