A taxonomy of suffix array construction algorithms
By Simon J. Puglisi, William F. Smyth, Andrew Turpin. CSUR, 2007
347 citations recorded by the source corpus.
Subfields: Artificial Intelligence, Computer Vision and Pattern Recognition, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/44fdf50be9c3248b12f83072bd3db6c7914825a4
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Artificial Intelligence
- Steven S. Skiena
- Eric Sadit Tellez
- Edgar Chávez
- Gonzalo Navarro
- Veli Mäkinen
- Paul Horton
- Kengo Sato
- Thierry Lecroq
In Computer Vision and Pattern Recognition
- Eric Sadit Tellez
- Edgar Chávez
- Gonzalo Navarro
- Kengo Sato
- Guy E. Blelloch
- Steven S. Skiena
- Julian Shun
- Julian Labeit
In Molecular Biology
- Steven S. Skiena
- Gonzalo Navarro
- Edgar Chávez
- Paul Horton
- Kengo Sato
- Thierry Lecroq
- Guy E. Blelloch
- Veli Mäkinen
Citations in the corpus
- Parallel Lightweight Wavelet Tree, Suffix Array and FM-Index Construction (2016, methodology): “However the fastest and most space-efficient sequential SA algorithms use induced copying [27], so our goal here is to parallelize such an algorithm.”
- Adaptive seeds tame genomic sequence comparison. (2011, background): “There has been much research on efficient algorithms to construct ordinary suffix arrays (Puglisi et al. 2007).”
- Compressed full-text indexes (2007, background): “There is also some recent work on efficient construction of (plain) suffix arrays (see [Puglisi et al. 2006] for a good survey).”
- A four-stage algorithm for updating a Burrows-Wheeler transform (2009, background): “Its construction is based on the construction of the suffix array, usually performed in O(n)-time [9].”
- Succinct nearest neighbor search (2011, methodology): “Secondly, the database is lexicographically sorted, using a linear sort for the first levels and a threeway quick sort for deeper levels, similarly to practical suffix array sorting algorithms [19].”
- The Algorithm Design Manual (2020, methodology): “See [PST07] for a recent survey covering all these developments.”